Os01g0693300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).
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Os01g0693300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.65 | 0.692 | 6.56 | 0.779 | 1.49 | 3.36 | 1.65 | 2.69 | 0.586 | 14.5 | 26.38 | 56 | -- | -- |
| 224.61 | 0.703 | 6.51 | 1.19 | 1.5 | 3.14 | 0.663 | -- | 0.671 | 14.3 | 26.66 | 58 | -- | -- |
| 222.95 | 0.701 | 6.53 | 0.97 | 1.48 | 3.2 | -- | 1.41 | 0.617 | 14.3 | 26.38 | 56 | -- | -- |
| 226.2 | 0.705 | 6.51 | 1.2 | 1.48 | 3.13 | -- | -- | 0.671 | 14.3 | 26.58 | 56 | -- | -- |
| 303.62 | 0.812 | 6.6 | 0.826 | -- | 2.54 | -- | 1.82 | 0.355 | -- | 24.47 | 240 | -- | -- |
| 370.89 | 0.903 | 6.67 | 0.455 | 0.643 | -- | 0.497 | -- | -0.0185 | 14.9 | -- | -- | -- | -- |
| 371.72 | 0.903 | 6.67 | 0.467 | 0.646 | -- | -- | -- | -0.0155 | 15 | -- | -- | -- | -- |
| 308.4 | 0.818 | 6.58 | 1.02 | -- | 2.4 | -- | -- | 0.384 | -- | 24.4 | 170 | -- | -- |
| 260.74 | 0.756 | 6.56 | -- | 1.32 | 2.67 | -- | -- | 0.446 | 14.4 | 26.43 | 51 | -- | -- |
| 395.67 | 0.929 | 6.67 | 0.439 | -- | -- | -- | -- | -0.0322 | -- | -- | -- | -- | -- |
| 377.46 | 0.909 | 6.68 | -- | 0.636 | -- | -- | -- | -0.0675 | 15 | -- | -- | -- | -- |
| 330.87 | 0.847 | 6.62 | -- | -- | 2.02 | -- | -- | 0.2 | -- | 24.2 | 40 | -- | -- |
| 400.76 | 0.934 | 6.68 | -- | -- | -- | -- | -- | -0.0809 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 214.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 3 | 215.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 9 | 219.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 12 | 220.09 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 18 | 220.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 22 | 222.20 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 30 | 223.07 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 34 | 223.33 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 35 | 223.35 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 37 | 223.40 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 38 | 223.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 39 | 223.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 41 | 223.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 42 | 223.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 46 | 223.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 47 | 223.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 163 | 230.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 200 | 232.19 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 202 | 232.25 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 213 | 232.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 230 | 233.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 235 | 233.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 260 | 234.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 263 | 234.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 424 | 237.88 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 459 | 238.64 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 17 |
| 513 | 239.55 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 20 |
| 523 | 239.78 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 534 | 240.03 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 640 | 241.92 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 660 | 242.21 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 701 | 242.96 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 874 | 245.84 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 935 | 246.59 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 950 | 246.71 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 22 |
| 958 | 246.81 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 985 | 247.27 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 23 |