Os01g0692600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0692600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.82 | 0.307 | 8.69 | 1.41 | 0.627 | 0.946 | 0.404 | 0.603 | 0.0818 | 11.1 | 24.45 | 205 | -- | -- |
| 43.33 | 0.307 | 8.68 | 1.5 | 0.596 | 0.914 | 0.379 | -- | 0.0917 | 11 | 24.67 | 280 | -- | -- |
| 43.48 | 0.307 | 8.7 | 1.42 | 0.6 | 0.936 | -- | 0.517 | 0.0874 | 11 | 24.53 | 246 | -- | -- |
| 43.67 | 0.308 | 8.68 | 1.52 | 0.601 | 0.879 | -- | -- | 0.108 | 11 | 24.7 | 251 | -- | -- |
| 53.22 | 0.34 | 8.7 | 1.49 | -- | 1.12 | -- | 0.393 | 0.145 | -- | 29.09 | 768 | -- | -- |
| 54.29 | 0.345 | 8.72 | 1.28 | 0.568 | -- | 0.31 | -- | -0.0608 | 10.3 | -- | -- | -- | -- |
| 54.68 | 0.346 | 8.72 | 1.29 | 0.567 | -- | -- | -- | -0.0602 | 10.3 | -- | -- | -- | -- |
| 53.09 | 0.339 | 8.68 | 1.6 | -- | 1.14 | -- | -- | 0.155 | -- | 30.25 | 770 | -- | -- |
| 97.59 | 0.463 | 8.74 | -- | 0.598 | 0.275 | -- | -- | -0.16 | 10.4 | 24.7 | 251 | -- | -- |
| 74.28 | 0.403 | 8.73 | 1.29 | -- | -- | -- | -- | -0.0618 | -- | -- | -- | -- | -- |
| 98.82 | 0.465 | 8.75 | -- | 0.561 | -- | -- | -- | -0.204 | 10.1 | -- | -- | -- | -- |
| 112.61 | 0.494 | 8.75 | -- | -- | 0.551 | -- | -- | -0.136 | -- | 52.83 | 706 | -- | -- |
| 117.85 | 0.507 | 8.76 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 3 | 40.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 5 | 40.95 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 11 | 41.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 32 | 41.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 54 | 41.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 65 | 41.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 83 | 41.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 105 | 41.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 179 | 42.13 | temperature | 15 | 270 | > th | dose dependent | sin | 13 | NA |
| 185 | 42.14 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 190 | 42.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 15 |
| 306 | 42.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 358 | 42.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 364 | 42.62 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 14 |
| 404 | 42.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 449 | 42.78 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 469 | 42.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 537 | 42.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 596 | 43.02 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 633 | 43.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 639 | 43.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 730 | 43.22 | temperature | 10 | 10 | > th | dose dependent | sin | 13 | NA |
| 760 | 43.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 774 | 43.26 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 803 | 43.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 847 | 43.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 899 | 43.40 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 902 | 43.40 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 932 | 43.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 934 | 43.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 935 | 43.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 947 | 43.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 6 |