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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0692000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase GST 26 (EC 2.5.1.18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.76 (0.0363) R2 : 0.57
β1 : -0.0993 (0.133) R2dD : 0.000451 R2D : -0.00515
β2 : 1.01 (0.0909) R2dC : 0.12 R2C : 0.139
β3 : -1.84 (0.0914) R2dE : 0.382 R2E : 0.397
β4 : 2.53 (0.376) R2dD*C : 0.0411 R2D*C : 0.0208
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.24 (0.0775) R2dN8 : 0.0111 R2N8 : 0.0148
σ : 0.678
deviance : 211.83
__
_____
C
peak time of C : 8.67
E
wheather : radiation
threshold : 0.78
memory length : 90
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 0.932
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.4 0.683 5.77 -0.1 1.02 -1.89 2.47 -0.532 0.216 8.29 0.79 97 1.12 --
211.83 0.678 5.76 -0.0993 1.01 -1.84 2.53 -- 0.24 8.67 0.78 90 0.932 --
229.79 0.706 5.78 -0.0177 0.993 -1.86 -- -0.816 0.226 8.13 0.7 97 1.42 --
231.48 0.709 5.77 -0.0154 1.02 -1.75 -- -- 0.233 8.95 0.6991 95 0.902 --
237.79 0.718 5.79 0.0462 -- -1.71 -- -1.33 0.243 -- 4.38 23 4.29 --
263.23 0.761 5.75 -0.0883 1.83 -- 1.61 -- 0.332 12.4 -- -- -- --
274.02 0.775 5.74 -0.0242 1.83 -- -- -- 0.342 12.6 -- -- -- --
246.36 0.731 5.79 -0.000395 -- -1.74 -- -- 0.245 -- 4.36 23 4.25 --
231.48 0.709 5.77 -- 1.03 -1.76 -- -- 0.229 8.91 0.6961 95 0.861 --
484.41 1.03 5.78 -0.0883 -- -- -- -- 0.311 -- -- -- -- --
274.04 0.774 5.74 -- 1.83 -- -- -- 0.345 12.6 -- -- -- --
246.32 0.731 5.8 -- -- -1.74 -- -- 0.228 -- 4.375 23 4.21 --
484.61 1.03 5.77 -- -- -- -- -- 0.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 211.83 radiation 1.0 90 < th dose independent sin 7 NA
3 212.80 radiation 1.0 90 < th dose dependent sin 7 NA
6 213.34 radiation 1.0 90 > th dose independent sin 6 NA
10 214.46 temperature 15.0 270 > th dose independent rect. 3 20
11 214.80 atmosphere 1015.0 270 < th dose independent rect. 23 4
13 215.01 atmosphere 1015.0 270 < th dose independent rect. 22 6
17 215.84 precipitation 0.1 270 < th dose independent rect. 3 20
18 215.84 precipitation 0.1 270 < th dose dependent rect. 3 20
20 216.75 radiation 1.0 90 < th dose independent rect. 24 16
22 216.87 temperature 15.0 270 > th dose independent rect. 4 18
25 217.20 radiation 1.0 90 < th dose dependent rect. 24 16
26 217.38 radiation 1.0 90 < th dose independent rect. 24 13
27 217.41 radiation 1.0 90 < th dose independent rect. 24 11
29 217.50 radiation 1.0 90 < th dose independent rect. 24 7
35 217.72 temperature 10.0 270 > th dose independent rect. 23 4
36 217.72 temperature 30.0 270 < th dose independent rect. 23 4
37 217.72 humidity 50.0 270 > th dose independent rect. 23 4
40 217.72 atmosphere 995.0 270 > th dose independent rect. 23 4
41 217.72 radiation 1.0 270 < th dose independent rect. 23 4
47 217.72 radiation 1.0 270 < th dose dependent rect. 23 4
52 217.74 wind 9.0 270 < th dose independent rect. 23 4
55 217.84 precipitation 0.1 270 < th dose independent rect. 23 4
57 217.84 precipitation 0.1 270 < th dose dependent rect. 23 4
58 217.92 radiation 1.0 90 < th dose dependent rect. 24 13
59 217.95 radiation 1.0 90 < th dose dependent rect. 24 11
63 218.09 radiation 10.0 10 < th dose dependent rect. 1 5
74 218.33 wind 9.0 270 < th dose independent rect. 3 20
87 218.86 precipitation 0.1 270 < th dose independent rect. 4 18
89 218.86 precipitation 0.1 270 < th dose dependent rect. 4 18
107 219.64 temperature 15.0 10 > th dose independent rect. 6 19
108 219.65 precipitation 0.1 270 < th dose independent rect. 2 22
109 219.65 precipitation 0.1 270 < th dose dependent rect. 2 22
113 219.85 temperature 10.0 270 > th dose independent rect. 22 6
114 219.85 temperature 30.0 270 < th dose independent rect. 22 6
115 219.85 humidity 50.0 270 > th dose independent rect. 22 6
118 219.85 atmosphere 995.0 270 > th dose independent rect. 22 6
119 219.85 radiation 1.0 270 < th dose independent rect. 22 6
125 219.85 radiation 1.0 270 < th dose dependent rect. 22 6
130 219.89 wind 9.0 270 < th dose independent rect. 22 6
134 219.99 wind 1.0 270 > th dose independent rect. 23 4
135 220.09 wind 9.0 270 < th dose independent rect. 4 18
148 220.80 radiation 1.0 43200 < th dose dependent rect. 20 5
153 221.04 temperature 30.0 10 < th dose dependent rect. 24 6
156 221.07 wind 9.0 270 < th dose dependent rect. 18 15
160 221.16 temperature 30.0 90 < th dose dependent rect. 1 4
161 221.21 wind 1.0 270 > th dose independent rect. 22 6
163 221.29 precipitation 0.1 270 < th dose independent rect. 22 6
164 221.29 precipitation 0.1 270 < th dose dependent rect. 22 6
165 221.33 wind 9.0 90 < th dose dependent rect. 5 11
173 221.50 atmosphere 1015.0 270 < th dose independent rect. 24 2
175 221.57 temperature 10.0 270 > th dose independent rect. 24 2
176 221.57 temperature 30.0 270 < th dose independent rect. 24 2
177 221.57 humidity 50.0 270 > th dose independent rect. 24 2
180 221.57 atmosphere 995.0 270 > th dose independent rect. 24 2
181 221.57 radiation 1.0 270 < th dose independent rect. 24 2
187 221.57 radiation 1.0 270 < th dose dependent rect. 24 2
193 221.59 precipitation 0.1 270 < th dose independent rect. 24 2
194 221.59 precipitation 0.1 270 < th dose dependent rect. 24 2
195 221.61 wind 9.0 270 < th dose independent rect. 24 2
197 221.62 humidity 50.0 270 > th dose dependent rect. 23 4
303 222.41 wind 9.0 90 < th dose dependent rect. 5 19
335 222.71 wind 9.0 270 < th dose dependent rect. 3 10
336 222.73 wind 9.0 270 < th dose dependent rect. 3 20
348 222.90 temperature 30.0 270 < th dose dependent rect. 1 1
395 223.11 wind 9.0 270 < th dose dependent rect. 3 8
398 223.14 wind 5.0 270 < th dose independent rect. 18 14
402 223.21 precipitation 0.1 270 < th dose independent rect. 18 14
403 223.21 precipitation 0.1 270 < th dose dependent rect. 18 14
410 223.28 wind 1.0 270 > th dose independent rect. 8 10
413 223.38 temperature 15.0 270 > th dose independent rect. 18 14
427 223.67 wind 5.0 90 < th dose dependent rect. 5 8
434 223.92 humidity 50.0 270 > th dose dependent rect. 24 2
442 224.00 atmosphere 1015.0 270 < th dose dependent rect. 23 4
443 224.03 temperature 20.0 270 > th dose independent rect. 8 10
447 224.08 wind 9.0 10 < th dose independent rect. 1 5
448 224.08 temperature 10.0 10 > th dose independent rect. 1 5
450 224.08 temperature 30.0 10 < th dose independent rect. 1 5
451 224.08 humidity 50.0 10 > th dose independent rect. 1 5
454 224.08 atmosphere 995.0 10 > th dose independent rect. 1 5
455 224.08 atmosphere 1010.0 10 < th dose independent rect. 1 5
481 224.40 humidity 60.0 270 > th dose independent rect. 18 14
500 224.57 precipitation 0.1 10 < th dose independent rect. 6 19
501 224.57 precipitation 0.1 10 < th dose dependent rect. 6 19
539 224.86 wind 9.0 270 < th dose dependent rect. 23 4
542 224.89 temperature 10.0 270 > th dose independent rect. 8 10
543 224.89 atmosphere 1015.0 270 < th dose independent rect. 8 10
546 224.89 wind 7.0 90 < th dose dependent rect. 5 6
552 224.96 wind 9.0 1440 < th dose independent rect. 2 5
553 224.96 temperature 10.0 1440 > th dose independent rect. 2 5
556 224.96 temperature 30.0 1440 < th dose independent rect. 2 5
560 224.96 humidity 50.0 1440 > th dose independent rect. 2 5
565 224.96 atmosphere 995.0 1440 > th dose independent rect. 2 5
566 224.96 radiation 40.0 1440 < th dose independent rect. 2 5
570 224.96 radiation 40.0 270 < th dose independent rect. 18 14
571 224.96 temperature 10.0 1440 > th dose independent rect. 7 19
613 225.15 atmosphere 1015.0 270 < th dose independent rect. 10 17
615 225.16 atmosphere 995.0 270 > th dose independent rect. 3 20
617 225.18 atmosphere 1015.0 270 < th dose dependent rect. 1 1
622 225.23 atmosphere 1015.0 270 < th dose independent rect. 23 14
627 225.29 wind 9.0 270 < th dose independent rect. 8 10
628 225.32 atmosphere 995.0 270 > th dose independent rect. 18 14
631 225.42 temperature 10.0 270 > th dose dependent rect. 23 4
652 225.58 temperature 30.0 270 < th dose independent rect. 18 14
653 225.59 wind 9.0 270 < th dose dependent rect. 24 2
654 225.59 atmosphere 1015.0 90 < th dose dependent rect. 1 4
663 225.76 wind 1.0 270 > th dose independent rect. 9 19
670 225.89 wind 3.0 270 < th dose independent rect. 4 5
674 225.96 radiation 1.0 90 > th dose independent rect. 4 7
716 226.04 atmosphere 1015.0 270 < th dose independent rect. 9 19
755 226.44 humidity 50.0 270 > th dose independent rect. 3 20
760 226.46 wind 1.0 270 > th dose independent rect. 10 17
763 226.47 humidity 50.0 10 > th dose dependent rect. 1 5
764 226.48 atmosphere 995.0 270 > th dose independent rect. 4 18
806 226.75 temperature 10.0 270 > th dose dependent rect. 24 2
886 227.39 radiation 40.0 90 < th dose dependent rect. 11 18
889 227.41 precipitation 0.1 270 < th dose independent rect. 8 10
890 227.41 precipitation 0.1 270 < th dose dependent rect. 8 10
902 227.48 wind 9.0 10 < th dose dependent rect. 6 19
909 227.55 wind 3.0 90 < th dose independent rect. 5 8
936 227.79 humidity 50.0 270 > th dose dependent rect. 4 5
937 227.82 atmosphere 1015.0 270 < th dose independent rect. 4 18
946 227.98 humidity 50.0 270 > th dose independent rect. 4 18
959 228.14 temperature 15.0 270 > th dose independent rect. 13 10
963 228.15 atmosphere 995.0 270 > th dose dependent rect. 24 2
964 228.16 radiation 1.0 90 > th dose independent rect. 17 23
982 228.20 precipitation 0.1 270 < th dose independent rect. 3 8
986 228.20 precipitation 0.1 270 < th dose dependent rect. 3 8
996 228.26 wind 7.0 270 < th dose independent rect. 3 8