Os01g0691700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine protein phosphatase 2A.
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Os01g0691700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine protein phosphatase 2A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.2 | 0.183 | 11.6 | 0.445 | 0.682 | 0.751 | -0.409 | 0.565 | 0.137 | 7.8 | 30.94 | 8 | -- | -- |
| 15.63 | 0.186 | 11.5 | 0.536 | 0.687 | 0.757 | -0.457 | -- | 0.162 | 7.83 | 30.94 | 8 | -- | -- |
| 15.67 | 0.184 | 11.6 | 0.42 | 0.683 | 0.741 | -- | 0.648 | 0.136 | 7.81 | 30.63 | 7 | -- | -- |
| 16.19 | 0.187 | 11.5 | 0.523 | 0.683 | 0.754 | -- | -- | 0.159 | 7.78 | 31.29 | 9 | -- | -- |
| 30.7 | 0.258 | 11.6 | 0.53 | -- | 1.16 | -- | 0.402 | 0.225 | -- | 31.16 | 373 | -- | -- |
| 23.12 | 0.225 | 11.6 | 0.357 | 0.757 | -- | -0.267 | -- | 0.0266 | 6.56 | -- | -- | -- | -- |
| 23.29 | 0.226 | 11.6 | 0.352 | 0.756 | -- | -- | -- | 0.0273 | 6.52 | -- | -- | -- | -- |
| 30.81 | 0.259 | 11.5 | 0.62 | -- | 1.18 | -- | -- | 0.238 | -- | 31.5 | 379 | -- | -- |
| 22.66 | 0.223 | 11.6 | -- | 0.703 | 0.528 | -- | -- | 0.0663 | 7.34 | 31.29 | 9 | -- | -- |
| 53.05 | 0.34 | 11.6 | 0.371 | -- | -- | -- | -- | 0.0429 | -- | -- | -- | -- | -- |
| 26.57 | 0.241 | 11.6 | -- | 0.761 | -- | -- | -- | -0.012 | 6.49 | -- | -- | -- | -- |
| 40.6 | 0.297 | 11.6 | -- | -- | 0.971 | -- | -- | 0.133 | -- | 32.39 | 368 | -- | -- |
| 56.68 | 0.351 | 11.6 | -- | -- | -- | -- | -- | 0.00171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.00 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 5 | 13.25 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 23 | 13.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 64 | 14.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 73 | 14.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 84 | 14.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 96 | 14.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 156 | 14.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 163 | 14.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 194 | 14.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 207 | 14.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 233 | 15.11 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 237 | 15.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 255 | 15.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 259 | 15.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 264 | 15.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 265 | 15.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 267 | 15.24 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 275 | 15.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 307 | 15.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 311 | 15.36 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 321 | 15.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 370 | 15.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 377 | 15.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 390 | 15.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 424 | 15.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 457 | 15.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 469 | 15.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 504 | 15.71 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 13 |
| 508 | 15.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 514 | 15.73 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 529 | 15.76 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 595 | 15.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 620 | 15.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 633 | 15.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 640 | 15.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 666 | 15.95 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 15 |
| 718 | 16.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 722 | 16.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 725 | 16.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 735 | 16.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 795 | 16.13 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 14 |
| 874 | 16.21 | temperature | 25 | 90 | > th | dose independent | sin | 2 | NA |
| 930 | 16.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 945 | 16.28 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 21 |