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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0691000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acidic endochitinase SE2 precursor (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0298) R2 : 0.18
β1 : -0.278 (0.115) R2dD : 0.0125 R2D : -0.0192
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.672 (0.295) R2dE : 0.0208 R2E : -0.0901
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -22.4 (2.7) R2dD*E : 0.29 R2D*E : 0.147
γ1 : -0.0369 (0.0645) R2dN8 : 0.000673 R2N8 : -0.00489
σ : 0.549
deviance : 138.81
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 91
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.02
open length of G : 0.978

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.63 0.547 3.35 -0.287 0.253 -0.818 -0.122 -22.7 -0.0303 6.46 90.02 10 4.01 1
156.19 0.587 3.38 0.069 0.244 0.943 -0.423 -- -0.0293 6.12 90.02 10 4.01 1
135.63 0.542 3.35 -0.288 0.251 -0.807 -- -22.7 -0.0306 6.58 90.39 10 4.01 0.997
155.84 0.581 3.38 0.0665 0.242 1 -- -- -0.0311 6.53 89.78 18 3.93 1.08
138.81 0.549 3.35 -0.278 -- -0.672 -- -22.4 -0.0369 -- 91 10 4.02 0.978
163.03 0.599 3.36 0.0656 0.319 -- -0.59 -- 0.0364 5.82 -- -- -- --
163.8 0.599 3.36 0.0626 0.318 -- -- -- 0.0392 6.25 -- -- -- --
158.76 0.587 3.38 0.0774 -- 1.09 -- -- -0.0325 -- 89.51 26 3.91 1.15
155.98 0.582 3.38 -- 0.239 0.998 -- -- -0.0378 6.68 89.8 22 3.92 1.17
169.04 0.608 3.37 0.0712 -- -- -- -- 0.0462 -- -- -- -- --
163.91 0.599 3.36 -- 0.319 -- -- -- 0.0323 6.24 -- -- -- --
158.92 0.587 3.39 -- -- 1.09 -- -- -0.0411 -- 89.43 22 3.91 1.24
169.17 0.607 3.37 -- -- -- -- -- 0.0383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.73 humidity 90.0 10 < th dose independent rect. 4 1
3 137.06 temperature 25.0 10 > th dose independent rect. 4 1
5 137.12 wind 1.0 30 > th dose independent rect. 4 1
7 137.26 temperature 25.0 90 > th dose dependent rect. 4 1
9 137.88 wind 1.0 30 > th dose dependent rect. 4 1
11 139.07 atmosphere 1005.0 30 > th dose dependent rect. 4 1
13 140.41 temperature 25.0 90 > th dose independent rect. 2 3
15 140.77 temperature 25.0 270 > th dose independent rect. 1 1
18 141.16 temperature 25.0 90 > th dose dependent rect. 2 3
20 142.04 temperature 25.0 270 > th dose dependent rect. 2 1
31 143.58 wind 5.0 30 < th dose independent rect. 4 1
36 143.63 atmosphere 1005.0 30 > th dose independent rect. 4 1
39 143.67 temperature 10.0 30 > th dose independent rect. 4 1
41 143.67 temperature 30.0 30 < th dose independent rect. 4 1
42 143.67 humidity 50.0 30 > th dose independent rect. 4 1
46 143.67 atmosphere 995.0 30 > th dose independent rect. 4 1
47 143.67 atmosphere 1010.0 30 < th dose independent rect. 4 1
49 143.67 radiation 1.0 30 < th dose independent rect. 4 1
54 143.67 temperature 10.0 30 > th dose independent rect. 5 23
55 143.67 radiation 10.0 30 < th dose dependent rect. 4 1
61 143.73 precipitation 0.1 30 < th dose independent rect. 4 1
62 143.73 precipitation 0.1 30 < th dose dependent rect. 4 1
64 143.94 temperature 30.0 30 < th dose dependent rect. 4 1
66 144.07 humidity 50.0 30 > th dose dependent rect. 4 1
67 144.12 wind 7.0 1440 < th dose independent rect. 5 1
69 144.12 temperature 10.0 1440 > th dose independent rect. 5 1
72 144.12 temperature 30.0 1440 < th dose independent rect. 5 1
76 144.12 humidity 50.0 1440 > th dose independent rect. 5 1
85 144.12 atmosphere 995.0 1440 > th dose independent rect. 5 1
86 144.12 atmosphere 1015.0 1440 < th dose independent rect. 5 1
87 144.12 radiation 20.0 1440 < th dose independent rect. 5 1
96 144.12 temperature 10.0 1440 > th dose independent rect. 6 23
99 144.16 wind 9.0 30 < th dose dependent rect. 4 1
111 144.46 atmosphere 1015.0 30 < th dose dependent rect. 4 1
138 144.73 wind 9.0 30 < th dose independent rect. 5 23
166 146.22 atmosphere 1005.0 30 > th dose dependent rect. 2 3
174 146.81 precipitation 0.1 30 < th dose independent rect. 5 23
176 146.81 precipitation 0.1 30 < th dose dependent rect. 5 23
182 147.45 humidity 90.0 10 < th dose dependent rect. 4 1
185 147.58 atmosphere 995.0 30 > th dose independent rect. 5 23
257 151.95 atmosphere 1005.0 30 > th dose independent rect. 2 3
294 153.52 temperature 25.0 720 < th dose independent rect. 21 5
297 153.61 temperature 25.0 1440 < th dose independent rect. 1 1
309 153.90 temperature 25.0 720 < th dose independent rect. 23 2
311 153.96 wind 3.0 30 < th dose independent rect. 2 3
324 154.37 wind 5.0 30 < th dose dependent rect. 2 3
331 154.57 temperature 15.0 30 > th dose independent rect. 5 21
336 154.64 temperature 10.0 30 > th dose dependent rect. 5 21
345 154.78 temperature 30.0 30 < th dose independent rect. 5 23
356 154.97 wind 9.0 1440 < th dose independent rect. 3 3
357 154.97 temperature 10.0 1440 > th dose independent rect. 3 3
360 154.97 temperature 30.0 1440 < th dose independent rect. 3 3
364 154.97 humidity 50.0 1440 > th dose independent rect. 3 3
373 154.97 atmosphere 995.0 1440 > th dose independent rect. 3 3
374 154.97 radiation 20.0 1440 < th dose independent rect. 3 3
385 154.97 temperature 10.0 1440 > th dose independent rect. 6 21
414 155.22 radiation 1.0 10 < th dose dependent rect. 4 10
417 155.24 wind 9.0 30 < th dose independent rect. 5 21
423 155.39 radiation 1.0 10 < th dose dependent rect. 4 4
431 155.44 radiation 1.0 10 < th dose independent rect. 4 10
438 155.48 precipitation 0.1 30 < th dose independent rect. 2 3
439 155.48 precipitation 0.1 30 < th dose dependent rect. 2 3
443 155.51 humidity 80.0 30 > th dose independent rect. 2 3
455 155.57 temperature 10.0 30 > th dose independent rect. 2 3
457 155.57 temperature 30.0 30 < th dose independent rect. 2 3
458 155.57 humidity 50.0 30 > th dose independent rect. 2 3
461 155.57 atmosphere 995.0 30 > th dose independent rect. 2 3
462 155.57 atmosphere 1010.0 30 < th dose independent rect. 2 3
464 155.57 radiation 1.0 30 < th dose independent rect. 2 3
470 155.57 radiation 20.0 30 < th dose dependent rect. 2 3
479 155.64 precipitation 0.1 30 < th dose independent rect. 5 21
480 155.64 precipitation 0.1 30 < th dose dependent rect. 5 21
484 155.66 radiation 1.0 10 < th dose independent rect. 4 4
492 155.70 atmosphere 1000.0 30 > th dose independent rect. 5 21
505 155.75 humidity 50.0 30 > th dose independent rect. 5 23
512 155.81 humidity 90.0 270 < th dose independent rect. 1 1
531 155.94 radiation 1.0 43200 < th dose dependent rect. 3 1
541 155.99 radiation 1.0 10 < th dose independent rect. 2 12
553 156.04 radiation 1.0 30 < th dose dependent rect. 2 12
599 156.15 humidity 80.0 720 < th dose independent rect. 22 12
602 156.16 atmosphere 1000.0 30 > th dose independent rect. 3 23
613 156.22 temperature 25.0 720 > th dose dependent rect. 5 3
614 156.23 wind 7.0 720 < th dose independent rect. 17 12
620 156.27 radiation 1.0 10 < th dose independent rect. 2 10
624 156.27 radiation 1.0 30 < th dose dependent rect. 2 10
627 156.28 radiation 1.0 10 < th dose independent rect. 2 6
635 156.29 radiation 1.0 30 < th dose dependent rect. 2 6
674 156.42 humidity 90.0 720 < th dose independent rect. 1 4
686 156.47 temperature 10.0 30 > th dose dependent rect. 5 23
693 156.50 humidity 50.0 30 > th dose dependent rect. 2 3
694 156.51 atmosphere 1000.0 90 > th dose independent rect. 11 18
703 156.54 humidity 50.0 30 > th dose independent rect. 5 21
736 156.64 precipitation 0.1 720 < th dose independent rect. 5 12
738 156.64 precipitation 0.1 720 < th dose dependent rect. 5 12
741 156.66 temperature 25.0 90 < th dose dependent rect. 8 1
746 156.67 humidity 80.0 270 < th dose independent rect. 6 1
751 156.68 wind 1.0 30 > th dose independent rect. 2 3
752 156.68 humidity 80.0 270 < th dose dependent rect. 6 1
793 156.75 temperature 20.0 270 < th dose independent rect. 5 3
834 156.89 temperature 30.0 30 < th dose independent rect. 5 21
835 156.89 wind 1.0 30 > th dose independent rect. 5 23
843 156.93 humidity 90.0 720 < th dose dependent rect. 24 7
856 156.98 temperature 20.0 90 < th dose independent rect. 8 1
863 157.00 humidity 80.0 720 < th dose independent rect. 3 5
871 157.01 temperature 30.0 90 < th dose independent rect. 11 18
879 157.02 temperature 20.0 270 < th dose independent rect. 5 12
919 157.08 humidity 90.0 1440 < th dose dependent rect. 3 2
948 157.14 wind 1.0 90 > th dose independent rect. 5 6
949 157.14 humidity 80.0 14400 < th dose dependent rect. 2 7
956 157.16 humidity 80.0 720 < th dose independent rect. 22 17
973 157.20 radiation 40.0 90 < th dose independent rect. 11 18
982 157.21 temperature 25.0 30 > th dose dependent rect. 16 19
990 157.22 temperature 10.0 90 > th dose dependent rect. 5 6
991 157.23 wind 9.0 1440 < th dose independent rect. 3 1
993 157.23 temperature 10.0 1440 > th dose independent rect. 3 1
1000 157.23 humidity 50.0 1440 > th dose independent rect. 3 1