Os01g0690800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0690800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.89 | 0.598 | 7.75 | 2.4 | 0.886 | -2.25 | -0.143 | -2.64 | 0.926 | 5.2 | 20.1 | 3656 | -- | -- |
| 162.02 | 0.593 | 7.81 | 2.34 | 0.859 | -1.34 | 0.0185 | -- | 0.898 | 5.24 | 21 | 2575 | -- | -- |
| 160.82 | 0.591 | 7.77 | 2.48 | 0.84 | -2.23 | -- | -2.25 | 0.934 | 5.35 | 19.43 | 2393 | -- | -- |
| 162.02 | 0.593 | 7.81 | 2.34 | 0.858 | -1.34 | -- | -- | 0.898 | 5.25 | 21 | 2577 | -- | -- |
| 197.72 | 0.655 | 7.73 | 2.48 | -- | -3.19 | -- | -4.12 | 0.989 | -- | 18.74 | 2572 | -- | -- |
| 183.02 | 0.634 | 7.76 | 2.88 | 0.908 | -- | -0.228 | -- | 1.12 | 5.01 | -- | -- | -- | -- |
| 183.15 | 0.634 | 7.76 | 2.88 | 0.907 | -- | -- | -- | 1.12 | 5.03 | -- | -- | -- | -- |
| 200.13 | 0.659 | 7.83 | 2.3 | -- | -1.51 | -- | -- | 0.897 | -- | 20.8 | 2612 | -- | -- |
| 180.49 | 0.626 | 7.99 | -- | 0.885 | -2.39 | -- | -- | 0.0886 | 5.22 | 44.47 | 47520 | -- | -- |
| 226.38 | 0.703 | 7.77 | 2.91 | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
| 401.59 | 0.937 | 7.83 | -- | 0.958 | -- | -- | -- | 0.803 | 4.93 | -- | -- | -- | -- |
| 217.52 | 0.687 | 7.99 | -- | -- | -2.49 | -- | -- | 0.18 | -- | 23.25 | 47520 | -- | -- |
| 450 | 0.99 | 7.84 | -- | -- | -- | -- | -- | 0.824 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.01 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 2 | 147.78 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 4 | 149.43 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 6 | 149.67 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 7 | 150.05 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 8 | 150.41 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 13 | 151.46 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 23 | 152.51 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 32 | 152.91 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 37 | 153.48 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 60 | 153.92 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 111 | 154.19 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 120 | 154.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 128 | 154.25 | atmosphere | 1000.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 153 | 154.32 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 194 | 154.42 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 202 | 154.43 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 224 | 154.47 | wind | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 242 | 154.51 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 285 | 154.58 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 351 | 154.65 | atmosphere | 1000.0 | 43200 | > th | dose dependent | no | NA | NA |
| 355 | 154.66 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 362 | 154.66 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 369 | 154.67 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 393 | 154.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 468 | 154.82 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 470 | 154.82 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 471 | 154.82 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 491 | 154.84 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 494 | 154.84 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 510 | 154.86 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 579 | 154.90 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 607 | 154.92 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 694 | 154.97 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 722 | 154.99 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 810 | 155.03 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 910 | 155.07 | atmosphere | 1010.0 | 43200 | > th | dose dependent | no | NA | NA |
| 912 | 155.07 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 928 | 155.07 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 930 | 155.07 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 933 | 155.07 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 937 | 155.08 | humidity | 60.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 992 | 155.10 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |