Os01g0689900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0689900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.81 | 0.269 | 12.6 | 0.865 | 0.528 | -0.613 | -0.907 | -2.54 | 0.0575 | 9 | 1.09 | 15824 | -- | -- |
| 37.97 | 0.287 | 12.7 | 0.437 | 0.58 | -0.389 | -0.665 | -- | -0.0743 | 8.58 | 20.01 | 18370 | -- | -- |
| 33.89 | 0.271 | 12.6 | 0.878 | 0.525 | -0.545 | -- | -2.64 | 0.0578 | 8.56 | 1.45 | 16985 | -- | -- |
| 39.45 | 0.293 | 12.7 | 0.289 | 0.589 | -0.438 | -- | -- | -0.148 | 8.33 | 20 | 16980 | -- | -- |
| 49.41 | 0.329 | 12.7 | 0.314 | -- | -0.293 | -- | 0.869 | 0.0271 | -- | 1.45 | 16985 | -- | -- |
| 44.99 | 0.314 | 12.7 | 0.349 | 0.523 | -- | -0.905 | -- | 0.0355 | 8.81 | -- | -- | -- | -- |
| 47.36 | 0.322 | 12.7 | 0.315 | 0.54 | -- | -- | -- | 0.033 | 8.23 | -- | -- | -- | -- |
| 54.29 | 0.345 | 12.7 | 0.318 | -- | -0.286 | -- | -- | 0.0305 | -- | 1.45 | 16985 | -- | -- |
| 41.32 | 0.299 | 12.7 | -- | 0.58 | -0.434 | -- | -- | -0.145 | 8.41 | 20.01 | 16980 | -- | -- |
| 63.47 | 0.372 | 12.7 | 0.319 | -- | -- | -- | -- | 0.0392 | -- | -- | -- | -- | -- |
| 49.98 | 0.331 | 12.7 | -- | 0.542 | -- | -- | -- | -0.00206 | 8.19 | -- | -- | -- | -- |
| 56.93 | 0.353 | 12.7 | -- | -- | -0.287 | -- | -- | -0.00367 | -- | 1.177 | 41986 | -- | -- |
| 66.16 | 0.38 | 12.7 | -- | -- | -- | -- | -- | 0.00375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 31.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 32.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 13 | 32.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 15 | 32.44 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 16 | 32.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 18 | 32.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 19 | 32.53 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 21 | 32.56 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 23 | 32.56 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 24 | 32.56 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 28 | 32.57 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 31 | 32.57 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 74 | 32.65 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 76 | 32.65 | temperature | 25 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 82 | 32.66 | temperature | 25 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 89 | 32.67 | temperature | 25 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 200 | 32.79 | temperature | 25 | 43200 | < th | dose independent | sin | 20 | NA |
| 205 | 32.79 | temperature | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 213 | 32.80 | temperature | 25 | 43200 | > th | dose independent | sin | 21 | NA |
| 232 | 32.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 246 | 32.82 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 279 | 32.84 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 281 | 32.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 302 | 32.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 322 | 32.86 | temperature | 25 | 43200 | < th | dose dependent | sin | 19 | NA |
| 339 | 32.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 414 | 32.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 425 | 32.90 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 437 | 32.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 473 | 32.92 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 552 | 32.95 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 593 | 32.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 664 | 32.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 665 | 32.98 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 14 |
| 674 | 32.99 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 795 | 33.02 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 828 | 33.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 830 | 33.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 14 |
| 849 | 33.03 | radiation | 1 | 43200 | < th | dose dependent | sin | 21 | NA |
| 910 | 33.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 10 |