Os01g0688700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0688700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 374.99 | 0.91 | 3.61 | -1.12 | 0.316 | 5.15 | 1.03 | -24.7 | -0.334 | 22.8 | 998.8 | 96 | -- | -- |
| 380.61 | 0.916 | 3.4 | 0.0884 | 0.314 | 0.769 | 1.05 | -- | -0.336 | 23 | 998.8 | 96 | -- | -- |
| 378.92 | 0.907 | 3.61 | -1.15 | 0.327 | 5.13 | -- | -24.6 | -0.334 | 21.7 | 998.8 | 87 | -- | -- |
| 383.19 | 0.912 | 3.39 | 0.0515 | 0.337 | 0.894 | -- | -- | -0.341 | 22.3 | 998.3 | 115 | -- | -- |
| 385.33 | 0.914 | 3.61 | -1.16 | -- | 5.19 | -- | -25 | -0.337 | -- | 998.8 | 87 | -- | -- |
| 392.55 | 0.929 | 3.41 | 0.186 | 0.311 | -- | 1.06 | -- | -0.373 | 23.1 | -- | -- | -- | -- |
| 396.88 | 0.933 | 3.41 | 0.146 | 0.324 | -- | -- | -- | -0.374 | 22 | -- | -- | -- | -- |
| 390.07 | 0.92 | 3.39 | 0.0574 | -- | 0.884 | -- | -- | -0.337 | -- | 998.3 | 115 | -- | -- |
| 383.2 | 0.912 | 3.4 | -- | 0.343 | 0.916 | -- | -- | -0.337 | 22 | 998.2 | 115 | -- | -- |
| 403.17 | 0.938 | 3.4 | 0.15 | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
| 397.44 | 0.933 | 3.41 | -- | 0.324 | -- | -- | -- | -0.39 | 22 | -- | -- | -- | -- |
| 390.16 | 0.92 | 3.39 | -- | -- | 0.89 | -- | -- | -0.344 | -- | 998.3 | 115 | -- | -- |
| 403.77 | 0.938 | 3.4 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 368.00 | humidity | 80 | 10 | < th | dose dependent | rect. | 18 | 3 |
| 5 | 369.88 | humidity | 80 | 10 | < th | dose dependent | rect. | 18 | 7 |
| 18 | 370.87 | humidity | 80 | 10 | < th | dose dependent | rect. | 18 | 13 |
| 40 | 373.01 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 2 |
| 42 | 373.17 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 1 | 7 |
| 45 | 373.36 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 8 |
| 47 | 373.38 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 55 | 373.51 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 2 |
| 65 | 373.78 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 24 | 14 |
| 71 | 373.88 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 88 | 373.95 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 102 | 374.35 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 128 | 374.70 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 129 | 374.70 | atmosphere | 1000 | 90 | < th | dose dependent | sin | 5 | NA |
| 136 | 374.78 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 18 | 1 |
| 142 | 374.92 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 20 | 12 |
| 151 | 375.02 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 24 | 6 |
| 154 | 375.08 | humidity | 60 | 270 | < th | dose independent | rect. | 16 | 4 |
| 171 | 375.11 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 192 | 375.33 | humidity | 90 | 10 | < th | dose independent | rect. | 19 | 1 |
| 215 | 375.49 | atmosphere | 1000 | 270 | < th | dose independent | sin | 6 | NA |
| 241 | 375.71 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 3 | 5 |
| 248 | 375.76 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 18 | 3 |
| 264 | 375.82 | humidity | 60 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 301 | 375.98 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 304 | 376.02 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 3 | 2 |
| 430 | 376.72 | atmosphere | 1000 | 270 | > th | dose independent | sin | 4 | NA |
| 603 | 377.44 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 614 | 377.46 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 648 | 377.60 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 676 | 377.68 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 11 |
| 684 | 377.71 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 18 | 2 |
| 704 | 377.78 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 20 | 17 |
| 705 | 377.79 | atmosphere | 1000 | 720 | > th | dose independent | sin | 7 | NA |
| 721 | 377.86 | humidity | 60 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 734 | 377.90 | humidity | 90 | 30 | > th | dose independent | rect. | 13 | 3 |
| 742 | 377.91 | humidity | 90 | 30 | > th | dose dependent | rect. | 13 | 3 |
| 773 | 377.99 | humidity | 90 | 30 | > th | dose independent | rect. | 13 | 1 |
| 778 | 377.99 | humidity | 90 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 783 | 378.00 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 818 | 378.04 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 11 |
| 849 | 378.10 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 10 | 22 |
| 857 | 378.13 | humidity | 60 | 720 | > th | dose independent | rect. | 14 | 10 |
| 994 | 378.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 12 |