Os01g0688000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0688000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.44 | 0.665 | 6.5 | 1.92 | 2.62 | -1.74 | 0.171 | 3.24 | -0.766 | 6.99 | 24.75 | 4671 | -- | -- |
| 203.74 | 0.665 | 6.56 | 1.28 | 2.71 | -1.58 | 0.28 | -- | -0.761 | 6.82 | 21.17 | 4162 | -- | -- |
| 200.51 | 0.66 | 6.5 | 1.93 | 2.62 | -1.75 | -- | 3.23 | -0.762 | 6.99 | 24.7 | 4660 | -- | -- |
| 203.67 | 0.665 | 6.56 | 1.22 | 2.71 | -1.54 | -- | -- | -0.752 | 6.87 | 21.34 | 4190 | -- | -- |
| 542.55 | 1.08 | 6.52 | 2.53 | -- | -2.3 | -- | 5.8 | -0.73 | -- | 26.27 | 4919 | -- | -- |
| 270.73 | 0.771 | 6.62 | 0.583 | 2.68 | -- | 0.212 | -- | -1.04 | 7.05 | -- | -- | -- | -- |
| 270.85 | 0.771 | 6.62 | 0.587 | 2.68 | -- | -- | -- | -1.04 | 7.05 | -- | -- | -- | -- |
| 517.98 | 1.06 | 6.62 | 1.3 | -- | -2.06 | -- | -- | -0.714 | -- | 24.6 | 2016 | -- | -- |
| 229.46 | 0.706 | 6.67 | -- | 2.64 | -1.15 | -- | -- | -1.23 | 6.93 | 27.92 | 4770 | -- | -- |
| 649.57 | 1.19 | 6.68 | 0.64 | -- | -- | -- | -- | -0.994 | -- | -- | -- | -- | -- |
| 279.93 | 0.783 | 6.64 | -- | 2.69 | -- | -- | -- | -1.11 | 7.04 | -- | -- | -- | -- |
| 378.85 | 0.907 | 6.65 | -- | -- | -2.99 | -- | -- | -0.85 | -- | 24.5 | 484 | -- | -- |
| 660.37 | 1.2 | 6.7 | -- | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 2 | 196.20 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 22 | 200.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 27 | 200.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 35 | 201.25 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 37 | 201.27 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 50 | 201.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 51 | 201.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 52 | 201.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 13 |
| 56 | 201.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 21 |
| 60 | 201.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 71 | 201.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 73 | 201.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 84 | 201.65 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 104 | 201.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 115 | 201.83 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 119 | 201.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 120 | 201.84 | temperature | 25 | 4320 | > th | dose dependent | sin | 15 | NA |
| 122 | 201.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 161 | 201.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 190 | 202.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 13 |
| 191 | 202.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 208 | 202.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 212 | 202.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 231 | 202.16 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 243 | 202.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 298 | 202.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 322 | 202.41 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 342 | 202.47 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 418 | 202.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 483 | 202.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 541 | 203.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 2 |
| 554 | 203.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 562 | 203.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 577 | 203.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 589 | 203.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 595 | 203.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 694 | 203.47 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 5 |
| 785 | 203.62 | temperature | 30 | 4320 | < th | dose independent | sin | 21 | NA |
| 807 | 203.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 930 | 203.87 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 995 | 203.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 1 |