Os01g0687900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0687900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.26 | 0.405 | 3.18 | 0.667 | 0.356 | 1.11 | 0.126 | 3.11 | 0.227 | 3.2 | 19.4 | 4792 | -- | -- |
| 84.47 | 0.431 | 3.28 | 0.488 | 0.409 | 0.243 | 0.11 | -- | 0.203 | 2.85 | 19.4 | 4792 | -- | -- |
| 74.28 | 0.401 | 3.18 | 0.663 | 0.354 | 1.12 | -- | 3.16 | 0.227 | 3.25 | 19.4 | 4877 | -- | -- |
| 82.39 | 0.423 | 3.29 | 0.391 | 0.346 | 0.365 | -- | -- | 0.119 | 3.35 | 24.2 | 2281 | -- | -- |
| 81.14 | 0.42 | 3.17 | 0.613 | -- | 1.32 | -- | 3.5 | 0.225 | -- | 19.05 | 5155 | -- | -- |
| 86.36 | 0.436 | 3.28 | 0.557 | 0.364 | -- | 0.133 | -- | 0.24 | 3.05 | -- | -- | -- | -- |
| 86.42 | 0.435 | 3.28 | 0.554 | 0.365 | -- | -- | -- | 0.239 | 3.07 | -- | -- | -- | -- |
| 87.36 | 0.435 | 3.31 | 0.398 | -- | 0.485 | -- | -- | 0.106 | -- | 24.79 | 2504 | -- | -- |
| 86.06 | 0.432 | 3.32 | -- | 0.354 | 0.484 | -- | -- | 0.0397 | 3.16 | 21.7 | 3153 | -- | -- |
| 94.03 | 0.453 | 3.28 | 0.57 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 94.51 | 0.455 | 3.29 | -- | 0.376 | -- | -- | -- | 0.178 | 3.08 | -- | -- | -- | -- |
| 91.12 | 0.445 | 3.32 | -- | -- | 0.605 | -- | -- | 0.0346 | -- | 24.7 | 2569 | -- | -- |
| 102.59 | 0.473 | 3.29 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.50 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 2 | 69.78 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 6 | 70.21 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 8 | 70.31 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 21 | 71.17 | wind | 1 | 14400 | < th | dose dependent | sin | 13 | NA |
| 29 | 71.30 | wind | 1 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 32 | 71.36 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 35 | 71.39 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 44 | 71.47 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 48 | 71.50 | wind | 1 | 14400 | < th | dose independent | sin | 13 | NA |
| 54 | 71.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 17 | 19 |
| 60 | 71.63 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 62 | 71.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 70 | 71.70 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 74 | 71.72 | wind | 1 | 14400 | > th | dose independent | sin | 13 | NA |
| 80 | 71.74 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 139 | 72.03 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 167 | 72.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 206 | 72.29 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 229 | 72.37 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 230 | 72.38 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 251 | 72.44 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 263 | 72.47 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 270 | 72.49 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 272 | 72.50 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 273 | 72.50 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 274 | 72.50 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 307 | 72.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 326 | 72.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 351 | 72.72 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 370 | 72.76 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 386 | 72.79 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 409 | 72.86 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 411 | 72.86 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 422 | 72.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 446 | 72.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 450 | 72.97 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 470 | 73.06 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 480 | 73.09 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 540 | 73.26 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 603 | 73.47 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 645 | 73.61 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 657 | 73.64 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 708 | 73.81 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 742 | 73.91 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 751 | 73.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 757 | 73.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 765 | 73.97 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 786 | 74.03 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 859 | 74.20 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 870 | 74.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 886 | 74.26 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 908 | 74.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 979 | 74.39 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 8 |