Os01g0687600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0687600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16 | 0.188 | 10.4 | 0.733 | 0.292 | -0.651 | 0.0137 | 0.714 | 0.271 | 18.8 | 23.74 | 12 | -- | -- |
| 16.13 | 0.188 | 10.4 | 0.638 | 0.28 | -0.603 | 0.0313 | -- | 0.247 | 18.9 | 23.17 | 10 | -- | -- |
| 15.93 | 0.187 | 10.4 | 0.723 | 0.283 | -0.64 | -- | 0.591 | 0.272 | 18.8 | 23.28 | 11 | -- | -- |
| 16.13 | 0.188 | 10.4 | 0.639 | 0.279 | -0.601 | -- | -- | 0.248 | 19 | 23.08 | 8 | -- | -- |
| 19.67 | 0.208 | 10.4 | 0.704 | -- | -0.548 | -- | 0.491 | 0.263 | -- | 22 | 7 | -- | -- |
| 21.68 | 0.218 | 10.4 | 0.531 | 0.274 | -- | 0.0527 | -- | 0.162 | 22.3 | -- | -- | -- | -- |
| 21.69 | 0.218 | 10.4 | 0.529 | 0.273 | -- | -- | -- | 0.162 | 22.3 | -- | -- | -- | -- |
| 19.86 | 0.208 | 10.4 | 0.629 | -- | -0.519 | -- | -- | 0.242 | -- | 21.54 | 7 | -- | -- |
| 26.18 | 0.24 | 10.4 | -- | 0.257 | -0.427 | -- | -- | 0.148 | 20 | 23.86 | 5 | -- | -- |
| 26.24 | 0.239 | 10.4 | 0.534 | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
| 29.07 | 0.252 | 10.4 | -- | 0.276 | -- | -- | -- | 0.103 | 22.4 | -- | -- | -- | -- |
| 29.76 | 0.255 | 10.4 | -- | -- | -0.402 | -- | -- | 0.143 | -- | 23.8 | 3 | -- | -- |
| 33.75 | 0.271 | 10.4 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.59 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 3 | 14.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 4 | 14.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 5 | 14.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 6 | 14.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 15 | 14.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 18 | 14.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 21 | 14.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 37 | 14.78 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 77 | 14.92 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 87 | 14.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 189 | 15.25 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 194 | 15.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 229 | 15.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 241 | 15.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 262 | 15.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 383 | 15.60 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 468 | 15.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 521 | 15.84 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 524 | 15.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 562 | 15.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 581 | 15.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 625 | 15.99 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 729 | 16.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 748 | 16.12 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 780 | 16.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 808 | 16.19 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 830 | 16.21 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 844 | 16.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 861 | 16.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 933 | 16.29 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 978 | 16.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 979 | 16.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 992 | 16.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 998 | 16.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 8 |