Os01g0687500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Methionyl-tRNA formyltransferase family protein.
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Os01g0687500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Methionyl-tRNA formyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.31 | 0.437 | 7.48 | -1.21 | 0.777 | 1.37 | 0.518 | 2.09 | -1.04 | 21.6 | 25 | 91 | -- | -- |
| 88 | 0.437 | 7.51 | -1.46 | 0.79 | 1.54 | 0.429 | -- | -1.1 | 21.6 | 25.15 | 88 | -- | -- |
| 87.29 | 0.435 | 7.48 | -1.22 | 0.77 | 1.36 | -- | 2.04 | -1.04 | 21.6 | 25 | 95 | -- | -- |
| 88.64 | 0.438 | 7.51 | -1.48 | 0.778 | 1.57 | -- | -- | -1.1 | 21.7 | 25.14 | 94 | -- | -- |
| 104.09 | 0.475 | 7.47 | -1.29 | -- | 1.49 | -- | 1.68 | -1.07 | -- | 24.7 | 409 | -- | -- |
| 125.95 | 0.526 | 7.49 | -1.2 | 0.992 | -- | 1.09 | -- | -0.988 | 19 | -- | -- | -- | -- |
| 129.04 | 0.532 | 7.49 | -1.22 | 0.994 | -- | -- | -- | -0.986 | 19.1 | -- | -- | -- | -- |
| 104.96 | 0.477 | 7.5 | -1.51 | -- | 1.62 | -- | -- | -1.12 | -- | 24.88 | 413 | -- | -- |
| 143.8 | 0.559 | 7.47 | -- | 0.781 | 1.21 | -- | -- | -0.896 | 20.9 | 25.4 | 106 | -- | -- |
| 181.12 | 0.629 | 7.47 | -1.24 | -- | -- | -- | -- | -1 | -- | -- | -- | -- | -- |
| 168.49 | 0.607 | 7.46 | -- | 1.01 | -- | -- | -- | -0.849 | 19 | -- | -- | -- | -- |
| 163.08 | 0.595 | 7.45 | -- | -- | 1.42 | -- | -- | -0.933 | -- | 25.1 | 389 | -- | -- |
| 221.84 | 0.695 | 7.44 | -- | -- | -- | -- | -- | -0.866 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 5 | 86.07 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 6 | 86.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 11 | 86.18 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 22 | 86.32 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 26 | 86.33 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 102 | 87.20 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 147 | 87.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 217 | 88.47 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 238 | 88.59 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 252 | 88.65 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 254 | 88.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 444 | 90.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 504 | 91.01 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 533 | 91.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 700 | 92.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 753 | 93.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 850 | 93.82 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 954 | 94.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 958 | 94.63 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |