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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0686700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.58 (0.0449) R2 : 0.853
β1 : 2.75 (0.164) R2dD : 0.097 R2D : 0.0372
β2 : 5.55 (0.115) R2dC : 0.782 R2C : 0.735
β3 : -10.6 (1.29) R2dE : 0.144 R2E : -0.209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 32 (3.95) R2dD*E : 0.137 R2D*E : -0.124
γ1 : 0.609 (0.0946) R2dN8 : 0.018 R2N8 : -0.00302
σ : 0.823
deviance : 312.17
__
_____
C
peak time of C : 7.43
E
wheather : wind
threshold : 0.8429
memory length : 315
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.1
open length of G : 2.45

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.09 0.822 6.58 2.71 5.56 -10.3 1.5 31.1 0.605 7.44 0.8564 315 23.1 2.45
349.84 0.878 6.64 2.42 5.41 0.912 1.61 -- 0.704 7.59 0.8564 315 23.1 2.45
312.17 0.823 6.58 2.75 5.55 -10.6 -- 32 0.609 7.43 0.8429 315 23.1 2.45
346.32 0.867 6.65 2.41 5.48 -1.31 -- -- 0.58 7.59 0.9185 5 2.65 1.33
1914.25 2.04 6.72 2.67 -- -9.26 -- 32.6 0.732 -- 0.8 190 22.9 2.88
351.79 0.879 6.64 2.46 5.4 -- 1.53 -- 0.701 7.58 -- -- -- --
358.3 0.886 6.64 2.5 5.4 -- -- -- 0.698 7.57 -- -- -- --
936.12 1.43 6.12 3.81 -- -5.56 -- -- 1.14 -- 10.09 10 13 11
494.44 1.04 6.66 -- 5.49 -3.31 -- -- 0.45 7.62 0.8521 6 2.27 1.98
1923.74 2.05 6.77 2.57 -- -- -- -- 0.781 -- -- -- -- --
522.56 1.07 6.71 -- 5.42 -- -- -- 0.42 7.54 -- -- -- --
871.15 1.37 6.88 -- -- -4.61 -- -- 0.799 -- 16.19 10 13 11
2098.56 2.14 6.84 -- -- -- -- -- 0.495 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.23 wind 1.0 270 < th dose dependent rect. 23 2
2 317.41 precipitation 0.1 270 > th dose independent rect. 2 2
3 317.44 precipitation 0.1 270 > th dose dependent rect. 2 2
4 318.43 temperature 20.0 90 > th dose independent rect. 22 7
5 318.99 temperature 20.0 270 > th dose independent rect. 20 7
7 319.29 wind 1.0 270 < th dose independent rect. 23 2
8 319.30 humidity 90.0 720 > th dose dependent rect. 20 1
9 319.41 radiation 1.0 1440 < th dose independent rect. 11 1
10 319.41 radiation 1.0 1440 < th dose dependent rect. 11 1
13 319.86 temperature 20.0 10 > th dose independent rect. 23 5
17 320.29 radiation 20.0 1440 < th dose independent rect. 12 1
18 320.47 radiation 20.0 1440 < th dose dependent rect. 12 1
27 321.09 radiation 20.0 1440 < th dose dependent rect. 11 4
28 321.21 precipitation 0.1 270 > th dose independent rect. 23 5
38 321.66 precipitation 0.1 270 > th dose dependent rect. 23 5
40 321.76 precipitation 0.1 10 > th dose independent rect. 3 5
61 321.80 precipitation 0.1 10 > th dose dependent rect. 3 5
82 321.93 precipitation 0.1 10 > th dose dependent rect. 3 3
86 321.94 precipitation 0.1 10 > th dose independent rect. 3 3
90 322.12 radiation 20.0 1440 > th dose independent rect. 12 1
91 322.12 humidity 90.0 720 > th dose dependent rect. 18 6
95 322.48 humidity 90.0 720 > th dose dependent rect. 20 3
102 322.76 temperature 20.0 10 > th dose independent rect. 20 8
114 323.35 wind 1.0 1440 > th dose independent rect. 23 1
124 323.93 temperature 20.0 270 > th dose independent rect. 23 1
131 324.08 radiation 10.0 1440 > th dose independent rect. 11 4
158 325.08 wind 1.0 270 < th dose independent rect. 17 9
191 325.72 radiation 1.0 1440 > th dose dependent rect. 12 1
194 325.84 humidity 90.0 720 > th dose dependent rect. 14 10
212 326.16 humidity 60.0 14400 > th dose independent rect. 7 1
220 326.27 wind 1.0 10 < th dose independent rect. 3 2
227 326.43 radiation 1.0 1440 < th dose independent rect. 9 6
247 326.83 temperature 20.0 90 > th dose independent rect. 22 19
275 327.13 temperature 20.0 90 > th dose independent rect. 7 22
289 327.32 wind 5.0 1440 > th dose independent rect. 13 2
292 327.48 precipitation 0.1 10 > th dose independent rect. 3 1
296 327.48 precipitation 0.1 10 > th dose dependent rect. 3 1
308 327.56 temperature 20.0 90 > th dose independent rect. 20 21
316 327.65 wind 1.0 10 < th dose dependent rect. 3 1
317 327.66 radiation 1.0 1440 < th dose independent rect. 9 1
318 327.66 wind 5.0 1440 < th dose independent rect. 13 2
319 327.66 radiation 1.0 1440 < th dose dependent rect. 9 1
350 328.03 wind 5.0 1440 > th dose dependent rect. 14 1
358 328.12 wind 1.0 270 < th dose independent rect. 11 15
362 328.16 temperature 20.0 270 > th dose independent rect. 20 19
377 328.23 wind 1.0 90 < th dose independent rect. 10 18
394 328.42 humidity 90.0 270 > th dose dependent rect. 23 2
398 328.44 atmosphere 1005.0 270 < th dose independent rect. 23 2
403 328.46 wind 5.0 720 > th dose independent rect. 21 2
435 328.70 temperature 20.0 270 > th dose independent rect. 11 15
436 328.70 radiation 20.0 1440 < th dose dependent rect. 11 18
443 328.75 wind 1.0 90 < th dose independent rect. 7 21
444 328.75 radiation 20.0 1440 < th dose dependent rect. 11 14
447 328.77 wind 3.0 1440 > th dose dependent rect. 13 3
460 328.86 atmosphere 1005.0 270 < th dose dependent rect. 1 1
461 328.90 temperature 20.0 720 < th dose independent rect. 22 1
474 329.00 radiation 20.0 1440 < th dose independent rect. 11 18
480 329.03 atmosphere 1005.0 90 < th dose dependent rect. 1 4
485 329.06 radiation 20.0 1440 < th dose independent rect. 11 14
487 329.07 radiation 20.0 1440 < th dose independent rect. 11 11
501 329.21 temperature 20.0 10 > th dose independent rect. 12 16
504 329.22 humidity 50.0 720 > th dose dependent rect. 14 13
512 329.27 atmosphere 1005.0 10 < th dose dependent rect. 1 5
522 329.36 temperature 20.0 270 > th dose independent rect. 20 12
526 329.39 humidity 70.0 1440 > th dose independent rect. 13 1
529 329.40 wind 9.0 1440 < th dose dependent rect. 13 3
588 329.71 humidity 60.0 14400 > th dose independent rect. 4 4
602 329.74 atmosphere 1005.0 270 < th dose independent rect. 22 5
615 329.83 humidity 70.0 1440 < th dose independent rect. 13 2
631 329.91 radiation 1.0 30 > th dose independent sin 9 NA
641 329.93 humidity 50.0 720 > th dose dependent sin 15 NA
669 330.01 humidity 90.0 720 > th dose dependent sin 18 NA
714 330.29 temperature 20.0 10 > th dose independent rect. 14 14
740 330.38 humidity 70.0 1440 > th dose independent rect. 12 3
787 330.65 humidity 80.0 1440 > th dose dependent rect. 12 2
804 330.76 wind 3.0 720 > th dose dependent rect. 21 2
808 330.77 temperature 20.0 270 < th dose independent rect. 13 19
867 330.93 temperature 20.0 90 < th dose independent rect. 22 10
913 331.15 wind 9.0 720 > th dose dependent rect. 18 3
932 331.24 wind 9.0 720 > th dose independent rect. 18 3
935 331.25 wind 1.0 90 > th dose independent sin 17 NA
947 331.28 wind 7.0 720 > th dose independent rect. 14 12
957 331.31 wind 7.0 720 > th dose independent rect. 13 16
971 331.33 precipitation 0.1 10 > th dose independent rect. 3 21
986 331.35 radiation 20.0 1440 < th dose dependent sin 20 NA
987 331.35 humidity 90.0 720 < th dose dependent rect. 19 1