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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0686300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : -0.15 (--) R2 : -975
β1 : 5.89 (--) R2dD : -8.94 R2D : -31.2
β2 : 0.147 (--) R2dC : 0.0937 R2C : -25.7
β3 : -284 (--) R2dE : -861 R2E : -497
β4 : -0.0639 (--) R2dD*C : 0.00902 R2D*C : -25.8
β5 : 558 (--) R2dD*E : -468 R2D*E : -109
γ1 : -0.0965 (--) R2dN8 : -0.334 R2N8 : -26.1
σ : 0.502
deviance : 114.08
__
_____
C
peak time of C : 9.61
E
wheather : wind
threshold : 5
memory length : 8
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.08 0.502 -0.15 5.89 0.147 -284 -0.0639 558 -0.0965 9.61 5 8 3 1
166.93 0.606 2.96 0.0687 0.0832 -0.233 -0.728 -- -0.106 8.58 5 8 3 1
53746.85 10.8 4.72 -4.16 8.8 -132 -- 438 -5.48 7.51 4.234 7 4.09 3.2
168.65 0.609 2.96 0.0454 0.0858 -0.214 -- -- -0.107 8.26 4.992 5 3.04 1.12
169.04 0.609 2.96 0.049 -- -0.127 -- -0.00234 -0.106 -- 2.927 6 4.85 2.81
166.99 0.606 2.96 0.0709 0.0823 -- -0.723 -- -0.106 8.63 -- -- -- --
168.69 0.608 2.96 0.0474 0.0849 -- -- -- -0.106 8.34 -- -- -- --
169.01 0.605 2.96 0.0463 -- -0.142 -- -- -0.102 -- 2.5 9 4.78 2.87
168.7 0.608 2.96 -- 0.0861 -0.225 -- -- -0.112 8.22 4.992 5 3.04 1.12
169.09 0.608 2.96 0.0479 -- -- -- -- -0.105 -- -- -- -- --
168.75 0.608 2.96 -- 0.0851 -- -- -- -0.111 8.3 -- -- -- --
169.07 0.606 2.96 -- -- -0.147 -- -- -0.107 -- 2.501 9 4.76 2.92
169.15 0.607 2.96 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.08 wind 9 4320 > th dose independent rect. 3 1
33 114.08 wind 9 4320 > th dose dependent rect. 3 1
65 114.39 wind 1 270 < th dose independent rect. 19 1
67 114.39 wind 1 720 < th dose dependent rect. 17 1
68 114.39 wind 1 270 < th dose dependent rect. 19 1
70 114.71 wind 1 720 < th dose independent rect. 17 1
74 115.18 wind 1 720 < th dose dependent rect. 16 4
97 120.07 wind 1 1440 > th dose independent rect. 19 1
126 127.38 wind 1 720 < th dose dependent rect. 14 7
142 130.29 wind 1 4320 > th dose independent rect. 15 3
154 132.65 wind 1 720 < th dose independent rect. 14 6
169 134.70 wind 1 4320 < th dose dependent rect. 14 7
180 135.96 wind 1 4320 < th dose independent rect. 14 7
237 138.54 wind 1 4320 > th dose independent rect. 14 7
253 138.97 wind 9 14400 > th dose dependent rect. 24 4
255 139.04 wind 9 14400 > th dose dependent rect. 22 12
262 139.12 wind 9 4320 < th dose independent rect. 2 7
264 139.15 wind 9 14400 > th dose dependent rect. 24 10
271 139.28 wind 1 4320 > th dose independent rect. 14 9
282 139.47 wind 9 14400 > th dose independent rect. 24 10
293 139.60 wind 9 4320 < th dose independent rect. 2 3
310 139.72 wind 9 14400 > th dose independent rect. 22 12
319 139.79 wind 9 14400 > th dose independent rect. 24 5
320 139.79 wind 9 14400 > th dose dependent rect. 22 7
321 139.80 wind 7 14400 < th dose independent rect. 4 2
322 139.80 wind 9 14400 < th dose independent rect. 1 9
538 140.43 wind 7 4320 < th dose independent rect. 7 1
578 140.47 wind 7 4320 < th dose independent rect. 22 11
667 140.65 wind 7 4320 < th dose independent rect. 22 8
884 141.37 temperature 20 4320 < th dose dependent rect. 11 1
987 141.83 humidity 90 4320 > th dose dependent rect. 11 1