Os01g0686000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGS-like domain containing protein.
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Os01g0686000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGS-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.8 | 0.647 | 9.34 | -1.06 | 2.65 | 1.6 | 0.945 | -1.96 | -0.749 | 7.99 | 2.14 | 1429 | 12.2 | -- |
| 195.89 | 0.652 | 9.34 | -0.765 | 2.65 | 1.75 | 0.845 | -- | -0.734 | 8.28 | 2.028 | 1392 | 12.9 | -- |
| 190.47 | 0.643 | 9.33 | -1.04 | 2.67 | 1.8 | -- | -2 | -0.769 | 8.2 | 2.143 | 1394 | 12 | -- |
| 197.46 | 0.654 | 9.33 | -0.789 | 2.68 | 1.76 | -- | -- | -0.731 | 8.31 | 1.92 | 1389 | 12.6 | -- |
| 575.74 | 1.12 | 9.36 | -0.864 | -- | 1.77 | -- | -1.97 | -0.647 | -- | 2.409 | 1420 | 11.9 | -- |
| 251.34 | 0.743 | 9.27 | -0.655 | 2.66 | -- | 0.887 | -- | -0.422 | 7.88 | -- | -- | -- | -- |
| 253.63 | 0.746 | 9.27 | -0.631 | 2.66 | -- | -- | -- | -0.423 | 7.89 | -- | -- | -- | -- |
| 323.95 | 0.842 | 9.35 | -0.667 | -- | -2.46 | -- | -- | -0.44 | -- | -2.29 | 1430 | 11.7 | -- |
| 212.01 | 0.678 | 9.33 | -- | 2.63 | 1.71 | -- | -- | -0.676 | 8.18 | 2.177 | 1394 | 12.3 | -- |
| 638.29 | 1.18 | 9.34 | -0.602 | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
| 264.13 | 0.76 | 9.25 | -- | 2.66 | -- | -- | -- | -0.352 | 7.91 | -- | -- | -- | -- |
| 335.68 | 0.856 | 9.33 | -- | -- | -2.45 | -- | -- | -0.366 | -- | -2.29 | 1430 | 11.7 | -- |
| 647.84 | 1.19 | 9.32 | -- | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 2 | 193.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 7 | 195.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 17 | 195.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 19 | 195.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 29 | 195.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 41 | 195.98 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 93 | 197.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 109 | 198.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 6 |
| 120 | 198.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 150 | 198.93 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 155 | 199.12 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 174 | 199.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 175 | 199.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 179 | 199.97 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 185 | 200.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 206 | 200.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 339 | 201.69 | radiation | 30 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 382 | 202.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 404 | 202.45 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 414 | 202.63 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 416 | 202.69 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 475 | 203.40 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 552 | 204.47 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 17 |
| 566 | 204.72 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 605 | 205.08 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 612 | 205.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 648 | 205.92 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 695 | 206.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 724 | 206.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 726 | 206.71 | humidity | 50 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 746 | 206.86 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 763 | 206.93 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 14 |
| 789 | 207.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 813 | 207.18 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 826 | 207.32 | humidity | 50 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 834 | 207.37 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 853 | 207.50 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 21 |
| 889 | 207.78 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 21 |
| 898 | 207.89 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 20 |
| 911 | 208.05 | humidity | 50 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 943 | 208.20 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 945 | 208.23 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 972 | 208.49 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 974 | 208.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 993 | 208.55 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |