Os01g0685900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 65kD microtubule associated protein.
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Os01g0685900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 65kD microtubule associated protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.26 | 0.617 | 3.24 | 0.339 | 0.318 | 0.799 | -0.7 | 3.64 | 0.168 | 7.77 | 9.032 | 4489 | -- | -- |
| 172.23 | 0.611 | 3.19 | 0.113 | 0.39 | 0.568 | -0.798 | -- | -0.106 | 7.55 | 10.8 | 5220 | -- | -- |
| 163.05 | 0.595 | 3.23 | 0.388 | 0.243 | 0.904 | -- | 3.79 | 0.0743 | 7.35 | 10.82 | 4425 | -- | -- |
| 166.09 | 0.6 | 3.44 | 0.172 | 0.388 | 1.42 | -- | -- | -1.04 | 8.37 | 10.8 | 6571 | -- | -- |
| 166.03 | 0.6 | 3.25 | 0.45 | -- | 1.02 | -- | 4.79 | 0.0663 | -- | 10.8 | 4425 | -- | -- |
| 181.17 | 0.631 | 3.15 | 0.065 | 0.359 | -- | -0.664 | -- | 0.277 | 8.37 | -- | -- | -- | -- |
| 182.53 | 0.633 | 3.15 | 0.0457 | 0.359 | -- | -- | -- | 0.278 | 8.61 | -- | -- | -- | -- |
| 170.54 | 0.608 | 3.5 | 0.138 | -- | 1.62 | -- | -- | -1.25 | -- | 10.8 | 5385 | -- | -- |
| 164.9 | 0.598 | 3.44 | -- | 0.363 | 1.38 | -- | -- | -1.02 | 8.28 | 10.87 | 5862 | -- | -- |
| 189.77 | 0.644 | 3.16 | 0.0468 | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
| 182.58 | 0.632 | 3.15 | -- | 0.359 | -- | -- | -- | 0.273 | 8.6 | -- | -- | -- | -- |
| 171.02 | 0.609 | 3.5 | -- | -- | 1.59 | -- | -- | -1.24 | -- | 10.8 | 5595 | -- | -- |
| 189.83 | 0.643 | 3.16 | -- | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.78 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 2 | 163.12 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 3 | 163.80 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 4 | 165.11 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 6 | 165.46 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 11 | 166.79 | wind | 5 | 10 | > th | dose independent | rect. | 11 | 5 |
| 20 | 168.23 | wind | 5 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 28 | 169.12 | radiation | 40 | 90 | > th | dose independent | rect. | 14 | 1 |
| 64 | 170.01 | wind | 3 | 10 | > th | dose dependent | rect. | 11 | 5 |
| 74 | 170.22 | radiation | 30 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 97 | 170.91 | humidity | 80 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 100 | 170.98 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 114 | 171.24 | wind | 5 | 10 | > th | dose independent | rect. | 12 | 1 |
| 133 | 171.74 | wind | 9 | 4320 | > th | dose dependent | sin | 0 | NA |
| 210 | 172.48 | wind | 3 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 233 | 172.73 | humidity | 80 | 4320 | < th | dose dependent | rect. | 22 | 9 |
| 242 | 172.83 | wind | 5 | 10 | > th | dose independent | rect. | 20 | 20 |
| 261 | 172.89 | wind | 5 | 10 | > th | dose independent | rect. | 11 | 9 |
| 267 | 172.97 | humidity | 80 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 268 | 172.98 | wind | 5 | 10 | > th | dose independent | rect. | 14 | 2 |
| 271 | 172.99 | humidity | 80 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 295 | 173.07 | wind | 5 | 10 | > th | dose independent | sin | 23 | NA |
| 305 | 173.12 | wind | 5 | 90 | > th | dose independent | rect. | 14 | 1 |
| 316 | 173.21 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 12 |
| 318 | 173.22 | humidity | 80 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 333 | 173.31 | humidity | 80 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 346 | 173.39 | wind | 9 | 4320 | > th | dose independent | rect. | 12 | 12 |
| 413 | 173.63 | wind | 3 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 418 | 173.68 | wind | 3 | 10 | > th | dose dependent | rect. | 14 | 2 |
| 454 | 173.85 | wind | 9 | 4320 | > th | dose independent | rect. | 23 | 17 |
| 461 | 173.86 | wind | 5 | 10 | < th | dose independent | rect. | 9 | 23 |
| 477 | 173.93 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 490 | 173.98 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 22 |
| 491 | 173.99 | wind | 5 | 10 | < th | dose independent | sin | 2 | NA |
| 500 | 174.02 | humidity | 80 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 528 | 174.06 | wind | 9 | 4320 | > th | dose independent | sin | 22 | NA |
| 534 | 174.07 | humidity | 80 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 549 | 174.14 | wind | 9 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 553 | 174.14 | wind | 3 | 30 | > th | dose dependent | rect. | 11 | 9 |
| 563 | 174.17 | wind | 9 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 764 | 174.52 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 820 | 174.64 | wind | 5 | 10 | < th | dose independent | rect. | 15 | 23 |
| 886 | 174.80 | humidity | 80 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 917 | 174.84 | wind | 5 | 10 | < th | dose independent | rect. | 3 | 23 |
| 930 | 174.86 | wind | 9 | 4320 | > th | dose dependent | no | NA | NA |