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Os01g0685800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0119) R2 : 0.00211
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0246 (0.025) R2dN8 : 0.00272 R2N8 : 0.00211
σ : 0.224
deviance : 23.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.15 0.183 13.8 0.198 0.317 0.201 0.226 1.81 0.064 21.7 0.8268 1478 -- --
15.62 0.184 13.8 -0.0151 0.304 0.229 0.0456 -- -0.0197 21.8 31.72 5172 -- --
15.24 0.182 13.8 0.19 0.309 0.216 -- 1.77 0.0622 21.6 0.7021 1450 -- --
15.6 0.184 13.8 -0.0341 0.288 0.241 -- -- -0.0192 21.7 31.7 5178 -- --
18.5 0.2 13.8 0.107 -- 0.421 -- 1.52 -0.027 -- 0.7092 1257 -- --
17.41 0.196 13.8 -0.02 0.307 -- 0.0604 -- 0.0229 21.8 -- -- -- --
17.42 0.195 13.8 -0.0223 0.306 -- -- -- 0.0227 21.8 -- -- -- --
18.93 0.203 13.8 -0.0255 -- 0.325 -- -- -0.0158 -- 30.49 876 -- --
15.57 0.184 13.8 -- 0.279 0.242 -- -- -0.0166 22 31.73 5175 -- --
23.02 0.224 13.8 -0.0193 -- -- -- -- 0.0224 -- -- -- -- --
17.43 0.195 13.8 -- 0.306 -- -- -- 0.0252 21.8 -- -- -- --
18.98 0.203 13.8 -- -- 0.307 -- -- -0.0254 -- 30.45 886 -- --
23.03 0.224 13.8 -- -- -- -- -- 0.0246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.52 temperature 30.0 14400 > th dose dependent rect. 8 1
15 14.57 temperature 30.0 14400 > th dose independent rect. 8 1
21 14.57 temperature 30.0 14400 < th dose independent rect. 3 6
30 14.58 temperature 30.0 14400 < th dose independent rect. 5 4
35 14.60 temperature 30.0 14400 < th dose independent rect. 7 2
37 14.60 temperature 30.0 14400 < th dose independent rect. 20 13
44 14.90 wind 1.0 43200 < th dose dependent rect. 3 8
47 14.94 wind 1.0 43200 > th dose independent rect. 3 7
49 14.96 precipitation 0.1 43200 > th dose dependent rect. 13 5
54 14.99 precipitation 0.1 43200 > th dose dependent rect. 13 8
55 15.00 wind 1.0 43200 > th dose independent rect. 24 10
72 15.00 wind 1.0 43200 < th dose dependent rect. 1 9
110 15.05 wind 1.0 43200 < th dose independent rect. 3 8
116 15.06 precipitation 0.1 43200 > th dose independent rect. 15 3
124 15.06 wind 1.0 43200 < th dose independent rect. 1 10
135 15.07 precipitation 0.1 43200 < th dose independent rect. 15 3
137 15.07 precipitation 0.1 43200 < th dose dependent rect. 15 3
143 15.07 precipitation 0.1 43200 > th dose dependent rect. 7 14
169 15.10 precipitation 0.1 43200 > th dose independent rect. 17 4
180 15.11 radiation 1.0 1440 < th dose independent rect. 17 23
185 15.11 atmosphere 995.0 43200 < th dose dependent rect. 10 15
186 15.12 precipitation 0.1 43200 < th dose independent rect. 17 4
190 15.12 radiation 1.0 1440 > th dose independent rect. 17 23
191 15.12 precipitation 0.1 43200 < th dose dependent rect. 17 4
196 15.12 precipitation 0.1 43200 > th dose dependent rect. 7 11
209 15.14 atmosphere 1000.0 43200 < th dose dependent rect. 5 3
210 15.14 atmosphere 1000.0 43200 < th dose dependent rect. 3 6
223 15.15 precipitation 0.1 43200 > th dose dependent rect. 17 5
226 15.15 atmosphere 1000.0 43200 < th dose dependent rect. 2 8
230 15.15 atmosphere 995.0 43200 < th dose dependent rect. 14 10
239 15.16 atmosphere 1000.0 43200 < th dose dependent sin 6 NA
240 15.16 atmosphere 1000.0 43200 < th dose dependent rect. 6 1
277 15.18 precipitation 0.1 43200 > th dose independent rect. 13 5
279 15.18 atmosphere 995.0 43200 < th dose dependent sin 18 NA
299 15.18 radiation 1.0 1440 < th dose dependent rect. 7 23
300 15.19 temperature 30.0 4320 < th dose independent rect. 11 1
301 15.19 precipitation 0.1 43200 < th dose independent rect. 13 5
305 15.19 precipitation 0.1 43200 > th dose dependent sin 21 NA
306 15.19 atmosphere 1005.0 43200 < th dose dependent rect. 11 1
311 15.19 precipitation 0.1 43200 < th dose dependent rect. 13 5
332 15.20 radiation 1.0 1440 > th dose independent rect. 7 23
336 15.20 wind 9.0 43200 < th dose dependent rect. 7 1
343 15.20 atmosphere 1005.0 43200 < th dose dependent rect. 7 6
349 15.20 precipitation 0.1 43200 > th dose dependent rect. 17 9
447 15.22 radiation 1.0 1440 < th dose independent rect. 7 23
450 15.22 wind 1.0 43200 > th dose dependent rect. 7 1
474 15.22 precipitation 0.1 43200 > th dose dependent rect. 13 18
476 15.22 atmosphere 995.0 43200 < th dose dependent rect. 5 20
488 15.22 atmosphere 1000.0 43200 < th dose dependent rect. 9 23
500 15.23 temperature 30.0 4320 > th dose independent rect. 11 1
528 15.23 atmosphere 1000.0 43200 < th dose dependent no NA NA
545 15.23 precipitation 0.1 43200 > th dose dependent rect. 13 13
557 15.23 atmosphere 1000.0 43200 < th dose dependent rect. 9 21
571 15.23 atmosphere 1000.0 43200 < th dose dependent rect. 6 23
580 15.24 precipitation 0.1 43200 > th dose independent rect. 19 2
581 15.24 precipitation 0.1 43200 < th dose independent rect. 19 2
585 15.24 precipitation 0.1 43200 < th dose dependent rect. 19 2
610 15.24 precipitation 0.1 43200 > th dose dependent rect. 16 14
617 15.24 atmosphere 1000.0 43200 < th dose dependent rect. 10 19
633 15.25 wind 5.0 1440 < th dose independent rect. 14 1
634 15.25 atmosphere 1000.0 43200 > th dose independent rect. 3 4
635 15.25 atmosphere 1000.0 43200 < th dose independent rect. 3 4
641 15.25 atmosphere 995.0 43200 < th dose independent rect. 4 11
669 15.25 radiation 1.0 1440 < th dose dependent rect. 11 19
734 15.26 radiation 1.0 1440 < th dose dependent rect. 17 23
746 15.27 radiation 1.0 1440 > th dose independent rect. 11 21
747 15.27 radiation 1.0 1440 < th dose independent rect. 11 21
788 15.28 atmosphere 1000.0 43200 > th dose independent rect. 12 1
797 15.28 precipitation 0.1 43200 > th dose independent rect. 13 8
801 15.28 atmosphere 1000.0 43200 > th dose independent rect. 2 11
804 15.28 atmosphere 995.0 43200 < th dose independent rect. 10 18
805 15.28 atmosphere 995.0 43200 > th dose independent rect. 22 19
812 15.28 wind 1.0 43200 < th dose dependent sin 5 NA
844 15.29 wind 5.0 1440 > th dose independent rect. 14 1
846 15.29 atmosphere 1000.0 43200 < th dose independent rect. 5 1
849 15.29 precipitation 0.1 43200 < th dose independent rect. 13 8
863 15.29 atmosphere 995.0 43200 < th dose independent rect. 12 15
865 15.29 atmosphere 995.0 43200 > th dose independent rect. 11 17
866 15.29 atmosphere 995.0 43200 > th dose independent rect. 23 17
871 15.29 atmosphere 995.0 43200 < th dose independent rect. 22 19
877 15.29 atmosphere 995.0 43200 < th dose independent rect. 21 21
878 15.29 atmosphere 995.0 43200 > th dose independent rect. 8 22
886 15.29 atmosphere 995.0 43200 < th dose independent rect. 17 23
898 15.29 precipitation 0.1 43200 < th dose dependent rect. 13 8
918 15.30 wind 1.0 43200 < th dose independent sin 7 NA
919 15.30 atmosphere 995.0 43200 > th dose independent no NA NA
920 15.30 atmosphere 995.0 43200 < th dose independent no NA NA
921 15.30 temperature 25.0 14400 > th dose independent rect. 21 1
923 15.30 atmosphere 1000.0 43200 > th dose independent rect. 5 1
947 15.30 atmosphere 1000.0 43200 < th dose independent rect. 3 14
948 15.30 atmosphere 1000.0 43200 > th dose independent rect. 3 15
949 15.30 atmosphere 995.0 43200 > th dose independent rect. 12 15
980 15.30 atmosphere 995.0 43200 > th dose independent rect. 14 23
996 15.30 atmosphere 1000.0 43200 < th dose dependent sin 16 NA