Os01g0684900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os01g0684900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.29 | 0.279 | 12.6 | 0.0285 | 0.802 | -0.809 | 0.359 | 0.515 | -0.303 | 21.9 | 19.4 | 2276 | -- | -- |
| 35.5 | 0.277 | 12.6 | 0.0184 | 0.806 | -0.909 | 0.303 | -- | -0.309 | 21.8 | 18.9 | 2420 | -- | -- |
| 35.5 | 0.278 | 12.6 | 0.0214 | 0.794 | -0.842 | -- | 0.481 | -0.309 | 21.9 | 18.91 | 2408 | -- | -- |
| 35.27 | 0.277 | 12.6 | -0.052 | 0.802 | -1.02 | -- | -- | -0.332 | 21.9 | 18.3 | 2374 | -- | -- |
| 70.81 | 0.392 | 12.6 | -0.0194 | -- | -0.845 | -- | 0.28 | -0.332 | -- | 19 | 2933 | -- | -- |
| 50.79 | 0.334 | 12.6 | -0.477 | 0.755 | -- | 0.416 | -- | -0.512 | 21.8 | -- | -- | -- | -- |
| 51.44 | 0.336 | 12.6 | -0.492 | 0.755 | -- | -- | -- | -0.512 | 21.7 | -- | -- | -- | -- |
| 69.79 | 0.389 | 12.6 | 0.0661 | -- | -1.12 | -- | -- | -0.333 | -- | 18.3 | 2947 | -- | -- |
| 35.2 | 0.276 | 12.6 | -- | 0.799 | -1.07 | -- | -- | -0.318 | 22 | 18.3 | 2398 | -- | -- |
| 85.3 | 0.432 | 12.6 | -0.485 | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
| 57.81 | 0.356 | 12.6 | -- | 0.754 | -- | -- | -- | -0.458 | 21.6 | -- | -- | -- | -- |
| 69.7 | 0.389 | 12.6 | -- | -- | -1.11 | -- | -- | -0.321 | -- | 18.38 | 2951 | -- | -- |
| 91.5 | 0.446 | 12.6 | -- | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 35.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 35 | 35.49 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 106 | 35.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 116 | 35.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 165 | 36.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 170 | 36.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 181 | 36.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 212 | 36.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 259 | 36.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 276 | 36.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 335 | 36.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 349 | 36.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 350 | 36.28 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 359 | 36.29 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 374 | 36.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 410 | 36.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 412 | 36.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 414 | 36.33 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 448 | 36.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 486 | 36.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 489 | 36.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 508 | 36.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 574 | 36.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 619 | 36.46 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 648 | 36.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 910 | 36.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |