Os01g0684800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0684800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.37 | 0.287 | 3.1 | -0.249 | 0.00185 | 0.533 | 0.304 | -1.07 | -0.0526 | 11.2 | 25.3 | 651 | -- | -- |
| 37.63 | 0.286 | 3.08 | -0.091 | 0.0145 | 0.441 | -0.397 | -- | -0.00633 | 22.4 | 25.37 | 649 | -- | -- |
| 37.71 | 0.286 | 3.1 | -0.292 | 0.0205 | 0.545 | -- | -1.25 | -0.0694 | 14.7 | 24.89 | 660 | -- | -- |
| 38.12 | 0.288 | 3.08 | -0.0615 | 0.0579 | 0.392 | -- | -- | -0.0118 | 18.2 | 25.01 | 656 | -- | -- |
| 37.73 | 0.286 | 3.11 | -0.279 | -- | 0.545 | -- | -1.31 | -0.066 | -- | 25.1 | 655 | -- | -- |
| 40.96 | 0.3 | 3.08 | 0.00635 | 0.22 | -- | -0.178 | -- | 0.0178 | 19.2 | -- | -- | -- | -- |
| 41.03 | 0.3 | 3.08 | 0.0106 | 0.22 | -- | -- | -- | 0.0177 | 19 | -- | -- | -- | -- |
| 38.25 | 0.288 | 3.08 | -0.0766 | -- | 0.434 | -- | -- | -0.0154 | -- | 25.1 | 637 | -- | -- |
| 38.22 | 0.288 | 3.08 | -- | 0.0713 | 0.372 | -- | -- | 0.000429 | 18.3 | 25.3 | 658 | -- | -- |
| 43.58 | 0.308 | 3.07 | 0.00602 | -- | -- | -- | -- | 0.0136 | -- | -- | -- | -- | -- |
| 41.03 | 0.3 | 3.08 | -- | 0.22 | -- | -- | -- | 0.0165 | 19 | -- | -- | -- | -- |
| 38.39 | 0.289 | 3.08 | -- | -- | 0.421 | -- | -- | -0.00526 | -- | 25.2 | 629 | -- | -- |
| 43.59 | 0.308 | 3.07 | -- | -- | -- | -- | -- | 0.013 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.70 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 2 | 36.74 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 9 | 36.86 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 18 | 36.97 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 31 | 37.08 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 39 | 37.12 | temperature | 25.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 62 | 37.19 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 87 | 37.23 | temperature | 25.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 90 | 37.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 99 | 37.27 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 131 | 37.33 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 141 | 37.34 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 4 |
| 162 | 37.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 13 | 2 |
| 207 | 37.41 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 12 |
| 266 | 37.48 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 304 | 37.56 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 22 |
| 309 | 37.57 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 310 | 37.58 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 9 |
| 327 | 37.60 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 2 |
| 443 | 37.75 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 477 | 37.81 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 485 | 37.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 22 |
| 516 | 37.87 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 529 | 37.87 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 530 | 37.88 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 3 |
| 558 | 37.91 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 18 |
| 579 | 37.93 | radiation | 1.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 587 | 37.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 590 | 37.94 | wind | 5.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 610 | 37.96 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 612 | 37.96 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 14 |
| 622 | 37.97 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 626 | 37.98 | temperature | 30.0 | 720 | < th | dose independent | sin | 17 | NA |
| 631 | 37.98 | temperature | 10.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 673 | 38.02 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 688 | 38.02 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 19 |
| 698 | 38.03 | humidity | 80.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 713 | 38.04 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 11 |
| 719 | 38.04 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 17 | 6 |
| 729 | 38.05 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 762 | 38.08 | wind | 1.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 763 | 38.08 | wind | 7.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 765 | 38.08 | temperature | 10.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 768 | 38.08 | humidity | 50.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 770 | 38.08 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 776 | 38.08 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 18 | 1 |
| 780 | 38.08 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 23 |
| 781 | 38.08 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 793 | 38.09 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 810 | 38.10 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 832 | 38.12 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 849 | 38.13 | temperature | 30.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 886 | 38.16 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 890 | 38.16 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 904 | 38.17 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 906 | 38.17 | wind | 1.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 972 | 38.21 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 8 |