Os01g0684200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0684200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.83 | 0.204 | 10.7 | 0.0122 | 0.295 | -0.836 | -0.0205 | -0.3 | 0.29 | 23.4 | 26.57 | 193 | -- | -- |
| 18.93 | 0.203 | 10.7 | -0.0281 | 0.304 | -0.82 | -0.0527 | -- | 0.284 | 23.4 | 26.93 | 178 | -- | -- |
| 18.82 | 0.202 | 10.7 | 0.0105 | 0.301 | -0.834 | -- | -0.285 | 0.287 | 23.5 | 26.7 | 182 | -- | -- |
| 18.94 | 0.203 | 10.7 | -0.0379 | 0.302 | -0.823 | -- | -- | 0.278 | 23.5 | 26.9 | 181 | -- | -- |
| 21.06 | 0.214 | 10.7 | -0.0842 | -- | -0.827 | -- | 0.151 | 0.276 | -- | 28.47 | 678 | -- | -- |
| 28.56 | 0.251 | 10.7 | 0.169 | 0.268 | -- | -0.141 | -- | 0.459 | 20.7 | -- | -- | -- | -- |
| 28.62 | 0.251 | 10.7 | 0.174 | 0.268 | -- | -- | -- | 0.459 | 20.7 | -- | -- | -- | -- |
| 21.08 | 0.214 | 10.7 | -0.0588 | -- | -0.831 | -- | -- | 0.277 | -- | 27.9 | 646 | -- | -- |
| 18.98 | 0.203 | 10.7 | -- | 0.3 | -0.808 | -- | -- | 0.285 | 23.5 | 26.91 | 181 | -- | -- |
| 32.69 | 0.267 | 10.7 | 0.173 | -- | -- | -- | -- | 0.457 | -- | -- | -- | -- | -- |
| 29.42 | 0.254 | 10.7 | -- | 0.268 | -- | -- | -- | 0.439 | 20.8 | -- | -- | -- | -- |
| 21.15 | 0.214 | 10.7 | -- | -- | -0.804 | -- | -- | 0.291 | -- | 27.94 | 640 | -- | -- |
| 33.48 | 0.27 | 10.7 | -- | -- | -- | -- | -- | 0.437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 7 | 19.26 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 19 | 19.49 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 26 | 19.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 28 | 19.61 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 29 | 19.62 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 39 | 19.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 40 | 19.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 58 | 19.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 96 | 19.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 108 | 19.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 124 | 19.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 166 | 19.93 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 176 | 19.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 200 | 19.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 218 | 19.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 270 | 20.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 329 | 20.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 403 | 20.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 429 | 20.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 437 | 20.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 439 | 20.17 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 486 | 20.22 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 493 | 20.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 516 | 20.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 656 | 20.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 678 | 20.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 688 | 20.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 721 | 20.42 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 722 | 20.42 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 740 | 20.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 741 | 20.43 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 773 | 20.45 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 815 | 20.47 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 878 | 20.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 882 | 20.51 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 905 | 20.52 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 914 | 20.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 916 | 20.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 10 |
| 962 | 20.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 964 | 20.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 965 | 20.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 979 | 20.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |