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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0682700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.036) R2 : 0.665
β1 : 3.85 (0.136) R2dD : 0.685 R2D : 0.332
β2 : 0.812 (0.0961) R2dC : 0.0621 R2C : -0.0869
β3 : 3.26 (0.173) R2dE : 0.389 R2E : -0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.89 (0.084) R2dN8 : 0.139 R2N8 : -0.147
σ : 0.656
deviance : 198.34
__
_____
C
peak time of C : 15.6
E
wheather : temperature
threshold : 27.55
memory length : 332
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.74 0.661 3.92 3.95 0.854 3.25 0.207 -0.572 0.912 15.5 27.82 319 -- --
198.07 0.655 3.93 3.87 0.83 3.29 0.241 -- 0.898 15.5 27.61 326 -- --
197.84 0.655 3.91 3.97 0.84 3.24 -- -0.648 0.916 15.5 27.72 321 -- --
198.34 0.656 3.93 3.85 0.812 3.26 -- -- 0.89 15.6 27.55 332 -- --
214.01 0.681 3.94 3.8 -- 2.94 -- -0.0536 0.813 -- 26.16 501 -- --
347.03 0.873 4.07 3.01 0.325 -- -0.0958 -- 0.172 10.3 -- -- -- --
347.07 0.872 4.07 3 0.325 -- -- -- 0.172 10.4 -- -- -- --
214.01 0.681 3.94 3.77 -- 2.91 -- -- 0.809 -- 26.12 499 -- --
543.77 1.09 4.08 -- 0.678 1.61 -- -- 0.145 12.3 27.55 332 -- --
353.52 0.879 4.08 3 -- -- -- -- 0.171 -- -- -- -- --
584.93 1.13 4.15 -- 0.314 -- -- -- -0.162 9.66 -- -- -- --
549.81 1.09 4.09 -- -- 1.51 -- -- 0.123 -- 26.12 411 -- --
590.76 1.13 4.16 -- -- -- -- -- -0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.24 temperature 30 270 < th dose dependent rect. 10 23
2 200.39 temperature 30 270 < th dose dependent rect. 12 23
5 201.39 temperature 30 270 < th dose dependent rect. 15 23
10 202.40 temperature 30 270 < th dose dependent no NA NA
11 202.77 temperature 25 270 < th dose dependent rect. 4 23
12 202.89 temperature 25 270 < th dose dependent rect. 1 23
25 204.64 temperature 25 10 < th dose dependent rect. 5 23
37 205.14 temperature 15 1440 > th dose dependent rect. 22 2
43 205.50 temperature 30 1440 < th dose dependent rect. 22 2
52 205.79 temperature 10 1440 > th dose dependent rect. 16 20
54 205.81 temperature 25 270 < th dose dependent rect. 21 23
58 205.84 temperature 30 1440 < th dose dependent rect. 16 20
60 205.88 temperature 30 270 < th dose dependent rect. 19 23
68 206.05 temperature 10 1440 > th dose dependent rect. 16 16
85 206.27 temperature 30 1440 < th dose dependent rect. 16 16
89 206.29 temperature 10 1440 > th dose dependent sin 12 NA
151 206.66 temperature 30 1440 < th dose dependent sin 12 NA
262 207.20 temperature 30 1440 < th dose dependent rect. 18 8
282 207.27 temperature 30 1440 < th dose dependent rect. 16 12
288 207.31 temperature 15 1440 > th dose dependent rect. 18 8
296 207.33 temperature 30 1440 < th dose dependent rect. 17 10
313 207.38 temperature 25 30 < th dose dependent rect. 17 23
329 207.44 temperature 25 30 < th dose dependent rect. 1 23
335 207.46 temperature 25 30 < th dose dependent rect. 9 23
346 207.53 temperature 25 30 < th dose dependent rect. 23 23
349 207.54 temperature 25 30 < th dose dependent rect. 13 23
352 207.55 temperature 25 30 < th dose dependent rect. 19 23
360 207.57 temperature 25 30 < th dose dependent rect. 11 23
367 207.63 temperature 25 30 < th dose dependent rect. 7 23
403 207.76 temperature 25 30 < th dose dependent rect. 21 23
457 207.99 temperature 15 1440 > th dose dependent rect. 10 22
543 208.36 temperature 15 1440 > th dose dependent no NA NA
621 208.67 temperature 15 1440 > th dose dependent rect. 1 23
636 208.71 temperature 15 1440 > th dose dependent rect. 5 23
967 210.25 temperature 30 1440 < th dose dependent rect. 5 2
996 210.43 temperature 10 1440 > th dose dependent rect. 5 2