Os01g0681200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acyl-CoA synthetase (EC 6.2.1.3).
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Os01g0681200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acyl-CoA synthetase (EC 6.2.1.3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.73 | 0.417 | 8.96 | 0.399 | 0.68 | 1.26 | -0.329 | -1.61 | 0.144 | 1.85 | 8.159 | 2719 | -- | -- |
| 81.21 | 0.42 | 8.9 | 0.799 | 0.68 | 1.26 | -0.437 | -- | 0.252 | 1.84 | 6.984 | 2746 | -- | -- |
| 79.14 | 0.414 | 8.96 | 0.387 | 0.676 | 1.26 | -- | -1.71 | 0.14 | 1.86 | 8.622 | 2692 | -- | -- |
| 81.95 | 0.422 | 8.9 | 0.814 | 0.68 | 1.26 | -- | -- | 0.255 | 1.81 | 9.495 | 2747 | -- | -- |
| 104.76 | 0.477 | 8.96 | 0.352 | -- | 1.48 | -- | -1.68 | 0.114 | -- | 7.358 | 2544 | -- | -- |
| 113.22 | 0.499 | 8.84 | 1.31 | 0.796 | -- | -0.4 | -- | 0.51 | 1.87 | -- | -- | -- | -- |
| 113.84 | 0.5 | 8.84 | 1.32 | 0.796 | -- | -- | -- | 0.513 | 1.85 | -- | -- | -- | -- |
| 105.91 | 0.479 | 8.9 | 0.863 | -- | 1.66 | -- | -- | 0.238 | -- | 13.8 | 1083 | -- | -- |
| 91 | 0.444 | 8.97 | -- | 0.748 | 1.63 | -- | -- | -0.0401 | 1.94 | -0.7694 | 10634 | -- | -- |
| 152.17 | 0.576 | 8.83 | 1.35 | -- | -- | -- | -- | 0.531 | -- | -- | -- | -- | -- |
| 159.79 | 0.591 | 8.88 | -- | 0.82 | -- | -- | -- | 0.366 | 1.9 | -- | -- | -- | -- |
| 120.97 | 0.512 | 8.93 | -- | -- | 1.85 | -- | -- | 0.111 | -- | 9.297 | 3926 | -- | -- |
| 200.47 | 0.661 | 8.87 | -- | -- | -- | -- | -- | 0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 9 | 76.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 21 | 77.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 51 | 77.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 83 | 77.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 85 | 77.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 103 | 77.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 154 | 78.11 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 231 | 78.40 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 347 | 78.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 518 | 79.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 584 | 79.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 606 | 79.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 670 | 80.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 680 | 80.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 701 | 80.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 713 | 80.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 866 | 80.54 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 967 | 80.72 | temperature | 20 | 4320 | > th | dose dependent | sin | 0 | NA |