Os01g0680100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0680100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.77 | 0.229 | 3.11 | -0.347 | 0.0405 | -1.29 | 0.11 | 6.32 | -0.0294 | 9.54 | 999.9 | 237 | -- | -- |
| 24.31 | 0.231 | 3.04 | 0.0389 | 0.0358 | -0.151 | 0.1 | -- | -0.0298 | 8.79 | 999.9 | 237 | -- | -- |
| 23.8 | 0.227 | 3.11 | -0.339 | 0.0394 | -1.31 | -- | 6.41 | -0.0293 | 9.49 | 999.7 | 219 | -- | -- |
| 24.3 | 0.23 | 3.04 | 0.0417 | 0.0366 | -0.17 | -- | -- | -0.0296 | 8.96 | 999.6 | 151 | -- | -- |
| 23.89 | 0.228 | 3.11 | -0.339 | -- | -1.3 | -- | 6.39 | -0.0293 | -- | 999.7 | 218 | -- | -- |
| 24.94 | 0.234 | 3.05 | 0.0657 | 0.0368 | -- | 0.102 | -- | -0.0399 | 9.19 | -- | -- | -- | -- |
| 24.98 | 0.234 | 3.05 | 0.0693 | 0.0364 | -- | -- | -- | -0.0398 | 9.19 | -- | -- | -- | -- |
| 24.35 | 0.23 | 3.04 | 0.0436 | -- | -0.168 | -- | -- | -0.0276 | -- | 999.6 | 93 | -- | -- |
| 24.34 | 0.23 | 3.04 | -- | 0.0369 | -0.177 | -- | -- | -0.0337 | 8.84 | 999.7 | 150 | -- | -- |
| 25.05 | 0.234 | 3.05 | 0.0692 | -- | -- | -- | -- | -0.0396 | -- | -- | -- | -- | -- |
| 25.1 | 0.234 | 3.05 | -- | 0.0365 | -- | -- | -- | -0.0475 | 9.05 | -- | -- | -- | -- |
| 24.39 | 0.23 | 3.05 | -- | -- | -0.175 | -- | -- | -0.033 | -- | 999.6 | 86 | -- | -- |
| 25.18 | 0.234 | 3.05 | -- | -- | -- | -- | -- | -0.0473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.62 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 1 |
| 8 | 20.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 45 | 20.87 | humidity | 90 | 90 | > th | dose independent | rect. | 16 | 1 |
| 46 | 20.87 | humidity | 90 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 51 | 20.98 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 1 |
| 55 | 20.98 | temperature | 20 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 88 | 21.26 | humidity | 90 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 127 | 21.77 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 6 |
| 156 | 22.12 | wind | 3 | 90 | < th | dose independent | rect. | 17 | 1 |
| 174 | 22.25 | wind | 5 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 181 | 22.38 | wind | 5 | 10 | < th | dose independent | rect. | 16 | 2 |
| 186 | 22.40 | temperature | 30 | 90 | > th | dose independent | rect. | 16 | 1 |
| 207 | 22.59 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 6 |
| 262 | 22.93 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 1 |
| 264 | 22.93 | radiation | 1 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 277 | 22.97 | temperature | 20 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 350 | 23.10 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 14 | 1 |
| 369 | 23.14 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 4 |
| 371 | 23.14 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 4 |
| 388 | 23.17 | temperature | 30 | 90 | > th | dose independent | rect. | 16 | 17 |
| 424 | 23.23 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 16 | 10 |
| 485 | 23.34 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 16 | 11 |
| 499 | 23.36 | atmosphere | 1000 | 270 | < th | dose independent | sin | 20 | NA |
| 538 | 23.42 | humidity | 70 | 270 | > th | dose independent | rect. | 14 | 15 |
| 546 | 23.43 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 555 | 23.44 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 23 |
| 562 | 23.45 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 13 | 10 |
| 563 | 23.45 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 7 | 11 |
| 570 | 23.46 | atmosphere | 1000 | 270 | > th | dose independent | sin | 20 | NA |
| 583 | 23.47 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 7 | 19 |
| 591 | 23.48 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 17 | 1 |
| 602 | 23.49 | wind | 5 | 10 | < th | dose independent | rect. | 16 | 16 |
| 725 | 23.58 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 11 |
| 765 | 23.61 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 11 |
| 792 | 23.62 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 16 | 19 |
| 799 | 23.63 | temperature | 30 | 270 | > th | dose independent | sin | 13 | NA |
| 852 | 23.64 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 23 | 20 |
| 879 | 23.65 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 18 |
| 891 | 23.66 | atmosphere | 1000 | 10 | > th | dose independent | sin | 17 | NA |
| 954 | 23.67 | radiation | 1 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 974 | 23.68 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 16 | 18 |
| 980 | 23.68 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 17 | 1 |