Os01g0679900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ythdf2-prov protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0679900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ythdf2-prov protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.66 | 0.406 | 10.6 | -0.185 | 1.64 | -0.327 | 0.356 | 8.09 | -0.52 | 7.31 | 29.8 | 1227 | -- | -- |
| 80.01 | 0.417 | 10.8 | -1.39 | 1.73 | 0.533 | 0.308 | -- | -0.459 | 7.17 | 32.36 | 2684 | -- | -- |
| 75 | 0.403 | 10.6 | -0.179 | 1.64 | -0.325 | -- | 8.08 | -0.52 | 7.31 | 29.8 | 1228 | -- | -- |
| 77.64 | 0.41 | 10.8 | -1.58 | 1.67 | 0.658 | -- | -- | -0.529 | 7.28 | 30.7 | 2606 | -- | -- |
| 216.07 | 0.685 | 10.6 | 0.433 | -- | -0.689 | -- | 11 | -0.474 | -- | 29.86 | 1336 | -- | -- |
| 94.04 | 0.455 | 10.8 | -1.42 | 1.66 | -- | 0.393 | -- | -0.645 | 7.1 | -- | -- | -- | -- |
| 94.45 | 0.455 | 10.8 | -1.41 | 1.67 | -- | -- | -- | -0.646 | 7.11 | -- | -- | -- | -- |
| 224.04 | 0.697 | 10.8 | -1.55 | -- | 0.635 | -- | -- | -0.497 | -- | 30.22 | 2749 | -- | -- |
| 140.97 | 0.553 | 10.8 | -- | 1.68 | 0.367 | -- | -- | -0.442 | 7.22 | 32.34 | 4882 | -- | -- |
| 240.78 | 0.725 | 10.9 | -1.38 | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
| 147.08 | 0.567 | 10.8 | -- | 1.65 | -- | -- | -- | -0.489 | 7.16 | -- | -- | -- | -- |
| 250.1 | 0.737 | 10.8 | -- | -- | -0.857 | -- | -- | -0.453 | -- | 35.39 | 41333 | -- | -- |
| 291.09 | 0.796 | 10.8 | -- | -- | -- | -- | -- | -0.463 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 4 | 75.63 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 5 | 75.64 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 8 | 75.66 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 9 | 75.67 | temperature | 30 | 1440 | > th | dose dependent | sin | 0 | NA |
| 105 | 75.72 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 254 | 75.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 259 | 75.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 295 | 75.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 313 | 75.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 314 | 75.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 337 | 76.02 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 338 | 76.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 360 | 76.07 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 362 | 76.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 363 | 76.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 367 | 76.13 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 368 | 76.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 393 | 76.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 429 | 76.30 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 436 | 76.34 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 446 | 76.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 587 | 76.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 599 | 76.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 636 | 76.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 654 | 76.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 656 | 76.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 676 | 76.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 693 | 76.90 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 842 | 77.05 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |