Os01g0679500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os01g0679500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 341.49 | 0.868 | 3.13 | 0.116 | 0.0732 | 0.739 | -1.15 | -3.29 | -0.0473 | 22.7 | 50.58 | 11 | -- | -- |
| 343.86 | 0.864 | 3.11 | 0.0352 | 0.0784 | 1.13 | -0.752 | -- | -0.0204 | 21.9 | 54.19 | 67 | -- | -- |
| 346.31 | 0.867 | 3.13 | 0.144 | 0.0891 | 0.743 | -- | -2.48 | -0.0491 | 20.6 | 50.76 | 11 | -- | -- |
| 346.1 | 0.866 | 3.13 | 0.132 | 0.119 | 1.24 | -- | -- | -0.0621 | 21.2 | 54.43 | 67 | -- | -- |
| 345.87 | 0.866 | 3.13 | 0.182 | -- | 0.72 | -- | -2.27 | -0.0292 | -- | 53.02 | 19 | -- | -- |
| 356.49 | 0.885 | 3.14 | 0.0167 | 0.00471 | -- | -0.644 | -- | -0.102 | 21.8 | -- | -- | -- | -- |
| 357.79 | 0.886 | 3.14 | 0.0442 | 0.0732 | -- | -- | -- | -0.0993 | 16.5 | -- | -- | -- | -- |
| 346.81 | 0.867 | 3.13 | 0.153 | -- | 1.25 | -- | -- | -0.0505 | -- | 54.73 | 67 | -- | -- |
| 346.64 | 0.867 | 3.14 | -- | 0.116 | 1.26 | -- | -- | -0.0634 | 21.9 | 54.18 | 67 | -- | -- |
| 358.07 | 0.884 | 3.14 | 0.0414 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 357.84 | 0.885 | 3.14 | -- | 0.0723 | -- | -- | -- | -0.104 | 16.5 | -- | -- | -- | -- |
| 347.4 | 0.868 | 3.13 | -- | -- | 1.2 | -- | -- | -0.0657 | -- | 54.49 | 67 | -- | -- |
| 358.12 | 0.883 | 3.14 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 334.73 | humidity | 80 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 31 | 339.45 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 32 | 340.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 35 | 340.78 | radiation | 30 | 90 | > th | dose independent | rect. | 10 | 2 |
| 37 | 340.91 | humidity | 80 | 30 | < th | dose dependent | rect. | 19 | 11 |
| 40 | 341.01 | humidity | 80 | 30 | < th | dose dependent | rect. | 19 | 9 |
| 56 | 341.68 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 62 | 342.04 | wind | 5 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 64 | 342.08 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 71 | 342.41 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 72 | 342.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 75 | 342.65 | radiation | 10 | 90 | > th | dose dependent | rect. | 10 | 2 |
| 76 | 342.66 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 77 | 342.77 | radiation | 40 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 80 | 342.91 | humidity | 60 | 270 | < th | dose independent | rect. | 16 | 1 |
| 81 | 342.92 | humidity | 60 | 270 | < th | dose independent | rect. | 16 | 3 |
| 83 | 342.96 | wind | 5 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 87 | 343.07 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 97 | 343.30 | humidity | 90 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 115 | 343.57 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 116 | 343.57 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 122 | 343.69 | radiation | 40 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 123 | 343.71 | radiation | 40 | 720 | > th | dose dependent | rect. | 10 | 2 |
| 147 | 343.93 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 164 | 343.98 | humidity | 60 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 171 | 344.19 | humidity | 60 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 174 | 344.24 | humidity | 80 | 30 | < th | dose independent | rect. | 19 | 1 |
| 180 | 344.32 | humidity | 90 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 197 | 344.35 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 199 | 344.37 | wind | 5 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 201 | 344.42 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 1 |
| 202 | 344.46 | wind | 3 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 212 | 344.59 | wind | 1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 215 | 344.63 | radiation | 10 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 252 | 344.82 | radiation | 40 | 30 | < th | dose independent | rect. | 20 | 16 |
| 259 | 344.90 | humidity | 80 | 270 | > th | dose independent | rect. | 8 | 1 |
| 261 | 344.91 | humidity | 90 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 263 | 344.94 | wind | 9 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 269 | 345.02 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 271 | 345.07 | wind | 5 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 272 | 345.08 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 1 |
| 277 | 345.12 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 18 | 3 |
| 281 | 345.19 | humidity | 90 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 282 | 345.22 | humidity | 90 | 4320 | > th | dose dependent | rect. | 9 | 8 |
| 303 | 345.35 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 323 | 345.36 | wind | 9 | 90 | > th | dose independent | rect. | 10 | 1 |
| 346 | 345.40 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 18 | 1 |
| 424 | 345.69 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 1 |
| 426 | 345.69 | radiation | 40 | 10 | > th | dose dependent | sin | 1 | NA |
| 437 | 345.72 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 444 | 345.75 | radiation | 40 | 10 | < th | dose independent | rect. | 21 | 22 |
| 460 | 345.82 | radiation | 40 | 10 | > th | dose dependent | no | NA | NA |
| 655 | 345.86 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 5 | 10 |
| 668 | 345.96 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 709 | 346.02 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 722 | 346.10 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 752 | 346.15 | humidity | 90 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 787 | 346.21 | wind | 9 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 828 | 346.26 | radiation | 40 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 856 | 346.36 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 861 | 346.38 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 864 | 346.41 | radiation | 40 | 90 | > th | dose dependent | sin | 6 | NA |
| 869 | 346.46 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 2 |
| 870 | 346.46 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 6 |
| 897 | 346.48 | radiation | 10 | 90 | > th | dose dependent | rect. | 16 | 20 |
| 903 | 346.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 923 | 346.55 | radiation | 40 | 90 | > th | dose dependent | rect. | 10 | 23 |