Os01g0679200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0679200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.71 | 0.483 | 3.09 | -0.538 | 0.148 | 0.548 | 0.0633 | -1.38 | 0.119 | 2.25 | 24.4 | 589 | -- | -- |
| 108.01 | 0.484 | 3.1 | -0.759 | 0.115 | 0.787 | 0.216 | -- | 0.0936 | 1.44 | 23.34 | 490 | -- | -- |
| 105.73 | 0.479 | 3.09 | -0.542 | 0.15 | 0.541 | -- | -1.39 | 0.117 | 2.43 | 24.4 | 589 | -- | -- |
| 107.99 | 0.484 | 3.12 | -0.755 | 0.153 | 0.78 | -- | -- | 0.0589 | 2.36 | 22.75 | 602 | -- | -- |
| 106.94 | 0.482 | 3.08 | -0.538 | -- | 0.541 | -- | -1.39 | 0.123 | -- | 24.4 | 545 | -- | -- |
| 114.66 | 0.502 | 3.14 | -0.936 | 0.124 | -- | -0.666 | -- | -0.0586 | 6.62 | -- | -- | -- | -- |
| 115.25 | 0.503 | 3.14 | -0.95 | 0.155 | -- | -- | -- | -0.0583 | 4.19 | -- | -- | -- | -- |
| 108.8 | 0.486 | 3.11 | -0.759 | -- | 0.786 | -- | -- | 0.0661 | -- | 23.37 | 391 | -- | -- |
| 120.62 | 0.512 | 3.1 | -- | 0.184 | 1.29 | -- | -- | 0.16 | 2.03 | 21.25 | 714 | -- | -- |
| 116.55 | 0.504 | 3.14 | -0.944 | -- | -- | -- | -- | -0.0541 | -- | -- | -- | -- | -- |
| 139.03 | 0.552 | 3.12 | -- | 0.137 | -- | -- | -- | 0.0475 | 4.31 | -- | -- | -- | -- |
| 122.29 | 0.515 | 3.09 | -- | -- | 1.27 | -- | -- | 0.167 | -- | 21.94 | 446 | -- | -- |
| 140.03 | 0.552 | 3.12 | -- | -- | -- | -- | -- | 0.0505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 16 | 103.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 24 | 104.21 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 26 | 104.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 30 | 104.32 | radiation | 20 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 32 | 104.33 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 37 | 104.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 60 | 104.54 | radiation | 10 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 80 | 104.68 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 100 | 104.78 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 101 | 104.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 113 | 104.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 116 | 104.86 | radiation | 20 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 133 | 104.94 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 146 | 104.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 170 | 105.06 | radiation | 10 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 174 | 105.07 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 201 | 105.18 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 205 | 105.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 229 | 105.26 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 244 | 105.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 251 | 105.31 | temperature | 10 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 252 | 105.32 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 268 | 105.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 22 |
| 279 | 105.38 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 19 |
| 309 | 105.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 317 | 105.47 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 323 | 105.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 13 |
| 362 | 105.52 | radiation | 10 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 394 | 105.57 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 395 | 105.57 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 407 | 105.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 448 | 105.66 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 473 | 105.69 | radiation | 30 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 486 | 105.70 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 498 | 105.71 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 528 | 105.74 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 9 |
| 598 | 105.81 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 614 | 105.82 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 646 | 105.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 691 | 105.88 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 715 | 105.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 741 | 105.92 | radiation | 30 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 752 | 105.93 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 792 | 105.96 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 816 | 105.97 | radiation | 40 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 824 | 105.97 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 845 | 105.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 851 | 105.99 | radiation | 40 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 863 | 106.00 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 864 | 106.00 | radiation | 40 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 868 | 106.00 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 906 | 106.02 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 919 | 106.03 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 963 | 106.06 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 964 | 106.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 991 | 106.08 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 17 |