Os01g0679000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase III subunit RPC82, C -terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0679000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA polymerase III subunit RPC82, C -terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.01 | 0.364 | 8.92 | 0.551 | 0.945 | -0.67 | -0.329 | 0.157 | 0.15 | 17.5 | 20.25 | 4180 | -- | -- |
| 60.04 | 0.361 | 8.91 | 0.58 | 0.945 | -0.692 | -0.312 | -- | 0.154 | 17.5 | 20.2 | 4158 | -- | -- |
| 60.27 | 0.362 | 8.92 | 0.56 | 0.944 | -0.67 | -- | 0.13 | 0.151 | 17.5 | 20.29 | 4179 | -- | -- |
| 60.29 | 0.362 | 8.91 | 0.577 | 0.943 | -0.696 | -- | -- | 0.156 | 17.5 | 20.3 | 4156 | -- | -- |
| 105.02 | 0.477 | 8.91 | 0.503 | -- | -0.632 | -- | 0.242 | 0.118 | -- | 20.5 | 4782 | -- | -- |
| 69.04 | 0.39 | 8.87 | 1 | 0.924 | -- | -0.244 | -- | 0.352 | 17.6 | -- | -- | -- | -- |
| 69.19 | 0.39 | 8.87 | 1 | 0.923 | -- | -- | -- | 0.351 | 17.6 | -- | -- | -- | -- |
| 105.01 | 0.477 | 8.9 | 0.554 | -- | -0.689 | -- | -- | 0.123 | -- | 20.2 | 4779 | -- | -- |
| 62.29 | 0.368 | 8.94 | -- | 0.923 | -1.01 | -- | -- | 0.0276 | 17.6 | 19.31 | 14512 | -- | -- |
| 113.46 | 0.498 | 8.86 | 0.974 | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
| 95.75 | 0.458 | 8.89 | -- | 0.907 | -- | -- | -- | 0.24 | 17.6 | -- | -- | -- | -- |
| 106.4 | 0.48 | 8.93 | -- | -- | -0.996 | -- | -- | 0.00471 | -- | 19.4 | 14938 | -- | -- |
| 138.49 | 0.549 | 8.88 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.73 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 3 | 54.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 7 | 55.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 25 | 56.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 41 | 57.44 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 70 | 58.16 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 73 | 58.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 83 | 58.34 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 93 | 58.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 98 | 58.47 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 111 | 58.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 112 | 58.57 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 120 | 58.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 122 | 58.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 129 | 58.69 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 131 | 58.72 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 152 | 58.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 153 | 58.85 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 160 | 58.89 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 164 | 58.90 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 171 | 58.91 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 193 | 58.99 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 203 | 59.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 211 | 59.03 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 221 | 59.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 223 | 59.04 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 243 | 59.10 | wind | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 248 | 59.11 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 264 | 59.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 274 | 59.16 | wind | 1.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 275 | 59.16 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 287 | 59.18 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 318 | 59.23 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 335 | 59.27 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 339 | 59.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 346 | 59.30 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 351 | 59.31 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 371 | 59.34 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 382 | 59.35 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 430 | 59.42 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 446 | 59.45 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 451 | 59.45 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 453 | 59.46 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 459 | 59.47 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 481 | 59.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 486 | 59.50 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 500 | 59.52 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 534 | 59.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 558 | 59.61 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 559 | 59.61 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 560 | 59.61 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 572 | 59.61 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 588 | 59.63 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 590 | 59.63 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 618 | 59.67 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 633 | 59.70 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 643 | 59.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 655 | 59.72 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 666 | 59.74 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 690 | 59.75 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 698 | 59.77 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 706 | 59.78 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 4 |
| 709 | 59.78 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 727 | 59.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 740 | 59.83 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 744 | 59.83 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 745 | 59.83 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 749 | 59.83 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 780 | 59.87 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 20 |
| 785 | 59.87 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 820 | 59.92 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 837 | 59.93 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 839 | 59.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 852 | 59.94 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 867 | 59.95 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 876 | 59.96 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 888 | 59.98 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 899 | 59.98 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 915 | 60.00 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 935 | 60.02 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 960 | 60.05 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |