Os01g0678900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0678900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.88 | 0.612 | 8.31 | 0.604 | 3.23 | -3.43 | 0.631 | -0.288 | -0.176 | 9.66 | 10.35 | 254 | 5.97 | 21 |
| 169.29 | 0.606 | 8.29 | 0.655 | 3.29 | -3.44 | 0.63 | -- | -0.143 | 9.65 | 10.23 | 243 | 5.75 | 21.3 |
| 171.08 | 0.609 | 8.32 | 0.644 | 3.24 | -3.44 | -- | -0.38 | -0.175 | 9.65 | 10.66 | 253 | 5.88 | 21.1 |
| 170.58 | 0.608 | 8.3 | 0.695 | 3.31 | -3.42 | -- | -- | -0.137 | 9.62 | 9.978 | 243 | 5.6 | 21.5 |
| 207.87 | 0.672 | 8.32 | 0.964 | -- | -5.39 | -- | 1.51 | 0.161 | -- | -11 | 599 | 5.52 | 19.4 |
| 295.79 | 0.806 | 8.34 | 0.0284 | 4.37 | -- | 0.988 | -- | -0.462 | 8.16 | -- | -- | -- | -- |
| 298.76 | 0.809 | 8.34 | 0.0568 | 4.37 | -- | -- | -- | -0.463 | 8.15 | -- | -- | -- | -- |
| 193.72 | 0.648 | 8.39 | 0.772 | -- | -5.27 | -- | -- | -0.173 | -- | -9.552 | 606 | 6.03 | 18.4 |
| 181.15 | 0.627 | 8.32 | -- | 3.35 | -3.22 | -- | -- | -0.244 | 9.52 | 8.089 | 244 | 5.47 | 21.6 |
| 1348.35 | 1.72 | 8.45 | 0.0923 | -- | -- | -- | -- | -0.411 | -- | -- | -- | -- | -- |
| 298.84 | 0.809 | 8.34 | -- | 4.37 | -- | -- | -- | -0.469 | 8.15 | -- | -- | -- | -- |
| 203.38 | 0.664 | 8.4 | -- | -- | -5.24 | -- | -- | -0.217 | -- | -10.77 | 616 | 6.03 | 18.2 |
| 1348.58 | 1.71 | 8.45 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 26 | 187.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 32 | 188.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 33 | 189.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 34 | 189.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 35 | 189.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 39 | 190.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 46 | 190.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 57 | 191.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 76 | 192.82 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 81 | 192.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 109 | 194.36 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 117 | 194.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 173 | 198.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 178 | 198.37 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 236 | 200.57 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 273 | 202.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 287 | 202.91 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 318 | 203.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 368 | 205.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 383 | 205.67 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 401 | 205.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 407 | 206.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 439 | 206.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 465 | 207.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 469 | 207.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 486 | 207.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 555 | 208.01 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 7 |
| 653 | 208.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 695 | 209.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 769 | 209.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 770 | 209.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 774 | 209.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 824 | 209.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 835 | 209.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 961 | 210.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |