Os01g0678600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S20 family protein.
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Os01g0678600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S20 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.18 | 0.364 | 14 | -0.168 | 1.63 | 0.618 | 0.574 | 2.22 | -0.502 | 22.7 | 30.68 | 286 | -- | -- |
| 63.44 | 0.371 | 14 | -0.228 | 1.6 | 0.583 | 0.179 | -- | -0.517 | 22.9 | 27.74 | 396 | -- | -- |
| 61.13 | 0.364 | 14 | -0.205 | 1.62 | 0.597 | -- | 1.67 | -0.512 | 22.8 | 32.21 | 338 | -- | -- |
| 63.49 | 0.371 | 14 | -0.225 | 1.6 | 0.566 | -- | -- | -0.519 | 22.9 | 28.04 | 394 | -- | -- |
| 148.2 | 0.567 | 13.9 | -0.385 | -- | 1.29 | -- | 1.79 | -0.695 | -- | 1.087e-05 | 1030 | -- | -- |
| 67.99 | 0.387 | 14 | -0.197 | 1.56 | -- | 0.197 | -- | -0.472 | 22.3 | -- | -- | -- | -- |
| 68.15 | 0.387 | 14 | -0.205 | 1.56 | -- | -- | -- | -0.473 | 22.3 | -- | -- | -- | -- |
| 143.12 | 0.557 | 14 | -0.346 | -- | 1.48 | -- | -- | -0.694 | -- | -2.01 | 1043 | -- | -- |
| 64.84 | 0.375 | 14 | -- | 1.6 | 0.542 | -- | -- | -0.493 | 22.8 | 28.73 | 393 | -- | -- |
| 216.61 | 0.688 | 13.9 | -0.181 | -- | -- | -- | -- | -0.469 | -- | -- | -- | -- | -- |
| 69.25 | 0.389 | 14 | -- | 1.56 | -- | -- | -- | -0.45 | 22.3 | -- | -- | -- | -- |
| 146.22 | 0.563 | 14 | -- | -- | 1.45 | -- | -- | -0.65 | -- | -3.56 | 1039 | -- | -- |
| 217.48 | 0.688 | 13.9 | -- | -- | -- | -- | -- | -0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 2 | 55.25 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 8 |
| 3 | 55.32 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 22 | 56.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 28 | 56.44 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 30 | 56.45 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 34 | 56.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 39 | 56.61 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 43 | 56.65 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 51 | 56.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 60 | 56.74 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 71 | 56.82 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 86 | 56.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 112 | 57.05 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 128 | 57.13 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 136 | 57.17 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 154 | 57.21 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 175 | 57.25 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 176 | 57.25 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 189 | 57.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 197 | 57.31 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 208 | 57.33 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 241 | 57.38 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 246 | 57.39 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 250 | 57.40 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 260 | 57.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 278 | 57.43 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 280 | 57.43 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 288 | 57.45 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 300 | 57.47 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 21 |
| 310 | 57.49 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 317 | 57.50 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 320 | 57.50 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 330 | 57.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 8 | 18 |
| 332 | 57.52 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 340 | 57.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 348 | 57.54 | wind | 1.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 389 | 57.58 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 409 | 57.60 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 415 | 57.61 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 429 | 57.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 434 | 57.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 437 | 57.64 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 19 |
| 441 | 57.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 444 | 57.65 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 458 | 57.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 466 | 57.67 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 470 | 57.67 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 483 | 57.68 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 501 | 57.70 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 522 | 57.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 528 | 57.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 559 | 57.75 | humidity | 90.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 560 | 57.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 572 | 57.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 610 | 57.78 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 627 | 57.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 635 | 57.79 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 650 | 57.80 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 17 |
| 653 | 57.80 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 657 | 57.81 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 658 | 57.81 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 671 | 57.82 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 672 | 57.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 680 | 57.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 689 | 57.83 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 718 | 57.84 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 725 | 57.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 726 | 57.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 731 | 57.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 741 | 57.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 748 | 57.86 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 752 | 57.86 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 755 | 57.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 757 | 57.87 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 778 | 57.88 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 854 | 57.92 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 858 | 57.92 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 867 | 57.93 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 878 | 57.94 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 879 | 57.94 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 967 | 57.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 977 | 57.99 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |