Os01g0677100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0677100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.02 | 0.319 | 2.95 | -0.0443 | 0.0939 | -0.12 | -0.626 | 0.363 | -0.00878 | 5.43 | 30 | 31 | -- | -- |
| 47.44 | 0.321 | 2.95 | -0.0538 | 0.105 | -0.132 | -0.562 | -- | -0.00127 | 5.84 | 26.83 | 31 | -- | -- |
| 47.91 | 0.325 | 2.95 | -0.0523 | 0.0937 | -0.0832 | -- | 0.31 | -0.00143 | 7.17 | 30 | 31 | -- | -- |
| 48.25 | 0.324 | 2.95 | -0.059 | 0.0963 | -0.113 | -- | -- | -0.00602 | 6.14 | 26.8 | 28 | -- | -- |
| 48.37 | 0.326 | 2.95 | -0.051 | -- | -0.0913 | -- | 0.304 | 0.000154 | -- | 30 | 31 | -- | -- |
| 47.93 | 0.325 | 2.95 | -0.0555 | 0.0996 | -- | -0.551 | -- | -0.00359 | 7 | -- | -- | -- | -- |
| 48.61 | 0.327 | 2.95 | -0.0643 | 0.105 | -- | -- | -- | -0.00142 | 8.58 | -- | -- | -- | -- |
| 48.67 | 0.325 | 2.95 | -0.0651 | -- | -0.0992 | -- | -- | -0.000558 | -- | 26.8 | 22 | -- | -- |
| 48.36 | 0.324 | 2.95 | -- | 0.093 | -0.103 | -- | -- | 0.00242 | 6.72 | 26.97 | 24 | -- | -- |
| 49.23 | 0.328 | 2.95 | -0.0639 | -- | -- | -- | -- | -0.00047 | -- | -- | -- | -- | -- |
| 48.72 | 0.327 | 2.95 | -- | 0.105 | -- | -- | -- | 0.00574 | 8.63 | -- | -- | -- | -- |
| 48.79 | 0.325 | 2.95 | -- | -- | -0.103 | -- | -- | 0.00443 | -- | 26.86 | 22 | -- | -- |
| 49.34 | 0.328 | 2.95 | -- | -- | -- | -- | -- | 0.00662 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.75 | radiation | 10 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 29 | 35.90 | humidity | 80 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 62 | 36.02 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 63 | 36.04 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 123 | 36.04 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 14 |
| 193 | 36.06 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 576 | 37.15 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 858 | 39.92 | radiation | 30 | 30 | < th | dose independent | sin | 11 | NA |