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Os01g0674800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Serine/threonine-specific protein kinase NPK15-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.81 (0.0243) R2 : 0.438
β1 : -1.67 (0.089) R2dD : 0.45 R2D : 0.39
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.28 (0.0519) R2dN8 : 0.0481 R2N8 : -0.012
σ : 0.456
deviance : 95.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.89 0.393 9.89 -2.2 0.381 0.129 -0.327 -2.6 -0.446 10.5 19.35 1625 -- --
74.42 0.402 9.83 -2.04 0.397 0.927 -0.356 -- -0.39 10.5 16.4 4397 -- --
70.27 0.39 9.89 -2.2 0.378 0.169 -- -2.72 -0.448 10.5 18.9 1631 -- --
75.01 0.403 9.83 -2.04 0.401 0.918 -- -- -0.387 10.6 16.47 4397 -- --
79.1 0.414 9.9 -2.19 -- 0.17 -- -2.82 -0.45 -- 18.9 1637 -- --
84.95 0.432 9.8 -1.65 0.397 -- -0.399 -- -0.278 10.4 -- -- -- --
85.6 0.433 9.8 -1.66 0.399 -- -- -- -0.279 10.4 -- -- -- --
83.94 0.429 9.83 -1.83 -- 0.669 -- -- -0.354 -- 18.9 1637 -- --
96.07 0.457 9.66 -- 0.397 -1.13 -- -- 0.28 9.38 21.7 47520 -- --
95.33 0.456 9.81 -1.67 -- -- -- -- -0.28 -- -- -- -- --
158.48 0.589 9.76 -- 0.41 -- -- -- -0.0935 10.7 -- -- -- --
104.05 0.475 9.68 -- -- -1.18 -- -- 0.317 -- 22 47520 -- --
168.86 0.607 9.77 -- -- -- -- -- -0.0949 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.53 wind 1 43200 < th dose independent rect. 2 1
2 66.10 wind 1 43200 < th dose dependent rect. 2 1
3 66.31 wind 1 43200 > th dose independent rect. 2 1
4 66.51 temperature 25 10 < th dose dependent sin 16 NA
11 67.58 temperature 25 10 < th dose dependent rect. 12 14
16 67.73 temperature 25 90 < th dose dependent rect. 12 13
20 67.85 temperature 10 90 > th dose dependent sin 15 NA
23 67.88 radiation 1 14400 < th dose dependent rect. 24 5
25 67.90 radiation 1 14400 < th dose dependent rect. 20 9
26 67.91 temperature 15 10 > th dose dependent rect. 16 12
27 67.92 radiation 1 14400 < th dose dependent rect. 22 7
29 67.94 humidity 90 14400 < th dose independent rect. 23 2
33 68.03 radiation 40 43200 < th dose independent rect. 24 8
36 68.06 temperature 10 10 > th dose dependent sin 14 NA
41 68.11 radiation 40 43200 < th dose independent rect. 7 1
43 68.12 radiation 20 43200 < th dose dependent rect. 24 5
46 68.13 radiation 1 43200 < th dose independent rect. 24 5
49 68.15 humidity 90 14400 > th dose independent rect. 23 3
55 68.18 radiation 40 43200 < th dose independent rect. 20 12
57 68.19 humidity 90 14400 > th dose independent rect. 24 1
61 68.21 radiation 40 43200 < th dose independent rect. 18 14
65 68.22 radiation 1 14400 < th dose dependent rect. 3 2
68 68.24 radiation 40 43200 < th dose independent rect. 3 5
83 68.31 radiation 10 43200 < th dose independent rect. 20 10
84 68.31 radiation 10 43200 < th dose independent rect. 18 12
86 68.32 radiation 10 43200 < th dose independent rect. 4 2
95 68.35 humidity 90 14400 < th dose independent rect. 22 4
106 68.43 wind 3 43200 > th dose independent rect. 15 1
109 68.44 radiation 1 43200 > th dose independent rect. 4 1
120 68.44 radiation 1 43200 > th dose dependent rect. 4 1
142 68.49 wind 3 43200 < th dose independent rect. 15 1
147 68.51 temperature 20 14400 < th dose dependent rect. 17 1
175 68.63 temperature 20 14400 < th dose independent rect. 12 5
178 68.64 temperature 15 14400 > th dose independent rect. 4 1
183 68.65 temperature 20 14400 > th dose independent rect. 12 4
189 68.66 temperature 20 14400 < th dose independent rect. 12 2
198 68.69 humidity 90 14400 < th dose independent rect. 22 9
208 68.72 temperature 20 14400 < th dose independent rect. 15 1
213 68.74 temperature 15 14400 < th dose independent rect. 4 1
221 68.76 temperature 20 14400 > th dose independent rect. 15 1
256 68.85 radiation 20 43200 < th dose independent rect. 17 2
258 68.85 radiation 20 43200 < th dose independent rect. 17 8
306 68.94 humidity 90 14400 > th dose independent rect. 22 9
311 68.96 humidity 70 43200 < th dose independent rect. 6 2
314 68.96 temperature 20 14400 < th dose dependent rect. 9 1
324 68.98 radiation 40 43200 < th dose independent rect. 15 4
325 68.98 radiation 40 43200 < th dose independent rect. 15 10
326 68.98 temperature 20 14400 < th dose dependent rect. 12 1
329 68.99 radiation 40 43200 < th dose independent rect. 15 2
330 68.99 radiation 40 43200 < th dose independent rect. 15 6
331 68.99 radiation 40 43200 < th dose independent rect. 15 13
345 69.00 temperature 20 14400 < th dose dependent rect. 6 13
368 69.06 humidity 90 14400 > th dose independent rect. 5 1
388 69.12 wind 1 43200 > th dose independent rect. 10 1
427 69.21 wind 1 43200 < th dose independent rect. 10 1
431 69.21 temperature 20 14400 < th dose dependent sin 23 NA
435 69.23 humidity 90 14400 < th dose independent rect. 5 1
451 69.25 temperature 15 14400 > th dose independent rect. 20 1
460 69.27 temperature 20 43200 > th dose independent rect. 9 1
469 69.29 temperature 20 43200 < th dose dependent rect. 2 1
473 69.30 temperature 20 43200 > th dose independent rect. 7 5
475 69.30 temperature 20 43200 > th dose independent rect. 6 11
488 69.31 temperature 20 43200 < th dose independent rect. 6 11
503 69.33 temperature 20 43200 < th dose independent rect. 7 3
530 69.35 wind 1 43200 < th dose independent rect. 10 3
536 69.35 wind 1 43200 > th dose independent rect. 9 16
645 69.47 temperature 20 14400 < th dose dependent rect. 6 5
654 69.47 wind 1 43200 < th dose dependent rect. 10 12
694 69.51 wind 1 43200 > th dose independent rect. 10 3
706 69.52 wind 1 43200 < th dose independent rect. 9 15
709 69.52 radiation 10 4320 > th dose dependent rect. 5 3
723 69.53 humidity 70 43200 > th dose independent rect. 6 2
729 69.53 wind 1 43200 > th dose independent rect. 10 12
730 69.53 wind 1 43200 < th dose independent rect. 10 12
790 69.58 temperature 20 43200 < th dose dependent sin 9 NA
806 69.59 radiation 1 43200 < th dose dependent rect. 6 5
871 69.64 temperature 20 43200 < th dose independent sin 23 NA
912 69.66 wind 5 43200 < th dose dependent rect. 15 1
931 69.67 temperature 15 270 > th dose dependent rect. 15 11
962 69.69 humidity 90 14400 > th dose dependent rect. 5 1
964 69.69 radiation 1 43200 < th dose dependent rect. 8 6
978 69.70 radiation 1 43200 > th dose independent rect. 8 6
979 69.70 radiation 1 43200 < th dose independent rect. 8 6