Os01g0674500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tubby-like protein 3.
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Os01g0674500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tubby-like protein 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.22 | 0.216 | 12.1 | -0.0728 | 0.344 | 0.318 | 0.332 | -0.289 | 0.0617 | 21.9 | 19.51 | 1435 | -- | -- |
| 21.4 | 0.215 | 12.1 | -0.0814 | 0.36 | 0.323 | 0.356 | -- | 0.0525 | 21.9 | 19.51 | 1408 | -- | -- |
| 21.59 | 0.216 | 12.1 | -0.0821 | 0.349 | 0.317 | -- | -0.311 | 0.0543 | 22 | 19.5 | 1400 | -- | -- |
| 21.84 | 0.218 | 12.1 | -0.109 | 0.35 | 0.317 | -- | -- | 0.0534 | 22 | 19.5 | 1408 | -- | -- |
| 28.36 | 0.249 | 12.1 | -0.134 | -- | 0.211 | -- | -0.0523 | -0.0259 | -- | 19.5 | 1400 | -- | -- |
| 25.14 | 0.235 | 12.1 | -0.124 | 0.331 | -- | 0.31 | -- | -0.019 | 21.7 | -- | -- | -- | -- |
| 25.5 | 0.236 | 12.1 | -0.136 | 0.329 | -- | -- | -- | -0.0195 | 21.7 | -- | -- | -- | -- |
| 28.02 | 0.247 | 12.1 | -0.0961 | -- | 0.344 | -- | -- | 0.0648 | -- | 19.51 | 1575 | -- | -- |
| 22.15 | 0.219 | 12.1 | -- | 0.356 | 0.312 | -- | -- | 0.0655 | 21.9 | 18.13 | 1407 | -- | -- |
| 31.95 | 0.264 | 12.1 | -0.133 | -- | -- | -- | -- | -0.02 | -- | -- | -- | -- | -- |
| 25.99 | 0.238 | 12.1 | -- | 0.329 | -- | -- | -- | -0.00443 | 21.7 | -- | -- | -- | -- |
| 28.21 | 0.247 | 12.1 | -- | -- | 0.361 | -- | -- | 0.0685 | -- | 17.59 | 1601 | -- | -- |
| 32.41 | 0.266 | 12.1 | -- | -- | -- | -- | -- | -0.00529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.16 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 6 | 21.24 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 7 | 21.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 33 | 21.26 | radiation | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 67 | 21.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 72 | 21.29 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 119 | 21.33 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 203 | 21.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 208 | 21.36 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 210 | 21.37 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 235 | 21.41 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 236 | 21.41 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 255 | 21.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 257 | 21.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 258 | 21.44 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 259 | 21.44 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 268 | 21.45 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 270 | 21.45 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 298 | 21.47 | radiation | 30 | 1440 | < th | dose dependent | sin | 2 | NA |
| 349 | 21.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 350 | 21.49 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 367 | 21.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 369 | 21.50 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 371 | 21.50 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 372 | 21.50 | wind | 7 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 391 | 21.51 | radiation | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 448 | 21.52 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 515 | 21.53 | radiation | 1 | 1440 | > th | dose dependent | sin | 3 | NA |
| 537 | 21.53 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 542 | 21.54 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 626 | 21.55 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 720 | 21.57 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 721 | 21.57 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 966 | 21.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 19 |