Os01g0674400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase PKN/PRK1, effector domain containing protein.
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Os01g0674400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase PKN/PRK1, effector domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.96 | 0.56 | 8.38 | 3.27 | 1.54 | -0.614 | 0.568 | -0.849 | 1.36 | 9.54 | 57 | 4416 | -- | -- |
| 143.11 | 0.557 | 8.37 | 3.26 | 1.53 | -0.603 | 0.55 | -- | 1.34 | 9.55 | 55 | 4375 | -- | -- |
| 143.15 | 0.557 | 8.38 | 3.29 | 1.53 | -0.633 | -- | -0.817 | 1.36 | 9.54 | 56.94 | 4415 | -- | -- |
| 144.2 | 0.559 | 8.37 | 3.28 | 1.53 | -0.603 | -- | -- | 1.34 | 9.53 | 55 | 4363 | -- | -- |
| 221.92 | 0.694 | 8.36 | 3.42 | -- | -1.45 | -- | 0.104 | 1.63 | -- | 74 | 818 | -- | -- |
| 151.91 | 0.578 | 8.34 | 3.17 | 1.54 | -- | 0.647 | -- | 1.48 | 9.58 | -- | -- | -- | -- |
| 153.47 | 0.58 | 8.34 | 3.19 | 1.54 | -- | -- | -- | 1.48 | 9.58 | -- | -- | -- | -- |
| 221.23 | 0.693 | 8.37 | 3.35 | -- | -1.46 | -- | -- | 1.55 | -- | 73.22 | 811 | -- | -- |
| 279.61 | 0.779 | 8.18 | -- | 1.62 | -1.97 | -- | -- | 1.29 | 8.25 | 59.94 | 34963 | -- | -- |
| 293.35 | 0.8 | 8.38 | 3.18 | -- | -- | -- | -- | 1.49 | -- | -- | -- | -- | -- |
| 422.35 | 0.961 | 8.42 | -- | 1.53 | -- | -- | -- | 1.13 | 9.42 | -- | -- | -- | -- |
| 347.77 | 0.869 | 8.53 | -- | -- | -2.8 | -- | -- | 0.83 | -- | 59.99 | 47520 | -- | -- |
| 560.47 | 1.11 | 8.46 | -- | -- | -- | -- | -- | 1.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.27 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 15 |
| 2 | 135.35 | wind | 7 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 5 | 135.59 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 7 | 135.87 | wind | 5 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 8 | 135.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 11 | 136.41 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 12 | 136.49 | wind | 7 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 13 | 136.51 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 14 | 136.52 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 17 | 136.82 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 20 | 136.85 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 24 | 136.92 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 30 | 137.01 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 31 | 137.04 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 35 | 137.11 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 45 | 137.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 53 | 137.30 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 64 | 137.37 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 73 | 137.42 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 86 | 137.49 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 118 | 137.61 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 128 | 137.63 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 129 | 137.63 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 134 | 137.63 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 145 | 137.64 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 149 | 137.64 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 188 | 137.67 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 189 | 137.68 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 216 | 137.71 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 225 | 137.72 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 237 | 137.73 | atmosphere | 1000 | 14400 | > th | dose dependent | sin | 6 | NA |
| 238 | 137.73 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 285 | 137.76 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 294 | 137.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 348 | 137.82 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 360 | 137.83 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 401 | 137.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 432 | 137.90 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 451 | 137.92 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 480 | 137.95 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 21 | NA |
| 481 | 137.95 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 20 | NA |
| 484 | 137.95 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 489 | 137.95 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 549 | 137.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 584 | 138.01 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 587 | 138.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 605 | 138.02 | atmosphere | 1000 | 14400 | > th | dose dependent | no | NA | NA |
| 622 | 138.03 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 641 | 138.03 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 644 | 138.04 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 664 | 138.04 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 674 | 138.04 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 679 | 138.04 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 711 | 138.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 772 | 138.08 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 774 | 138.08 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 778 | 138.08 | radiation | 20 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 829 | 138.10 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 844 | 138.11 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 847 | 138.11 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 866 | 138.12 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 900 | 138.13 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 6 | NA |
| 925 | 138.14 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 960 | 138.15 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 24 | 5 |