Os01g0674100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0674100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.23 | 0.189 | 10 | 0.537 | 0.19 | 0.696 | -0.144 | -0.48 | 0.419 | 9.98 | 93.47 | 189 | -- | -- |
| 16.42 | 0.189 | 10 | 0.534 | 0.19 | 0.663 | -0.163 | -- | 0.416 | 9.92 | 93.49 | 176 | -- | -- |
| 16.27 | 0.188 | 10 | 0.533 | 0.193 | 0.679 | -- | -0.514 | 0.42 | 10 | 93.45 | 175 | -- | -- |
| 16.52 | 0.189 | 10 | 0.528 | 0.192 | 0.659 | -- | -- | 0.417 | 10.1 | 93.44 | 176 | -- | -- |
| 18.44 | 0.2 | 10 | 0.529 | -- | 0.778 | -- | -0.474 | 0.421 | -- | 93.66 | 188 | -- | -- |
| 21.26 | 0.216 | 10 | 0.573 | 0.293 | -- | -0.0804 | -- | 0.351 | 7.64 | -- | -- | -- | -- |
| 21.28 | 0.216 | 10 | 0.571 | 0.293 | -- | -- | -- | 0.351 | 7.62 | -- | -- | -- | -- |
| 18.63 | 0.201 | 10 | 0.528 | -- | 0.769 | -- | -- | 0.418 | -- | 93.7 | 188 | -- | -- |
| 23.71 | 0.227 | 10 | -- | 0.19 | 0.68 | -- | -- | 0.37 | 10.5 | 93 | 175 | -- | -- |
| 25.88 | 0.238 | 10 | 0.575 | -- | -- | -- | -- | 0.356 | -- | -- | -- | -- | -- |
| 29.86 | 0.256 | 10 | -- | 0.298 | -- | -- | -- | 0.288 | 7.49 | -- | -- | -- | -- |
| 25.84 | 0.237 | 10 | -- | -- | 0.755 | -- | -- | 0.37 | -- | 93.33 | 188 | -- | -- |
| 34.59 | 0.275 | 10 | -- | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.54 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 5 | 15.68 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 49 | 16.37 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 53 | 16.39 | humidity | 90.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 77 | 16.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 85 | 16.53 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 122 | 16.63 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 124 | 16.64 | humidity | 90.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 131 | 16.66 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 173 | 16.75 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 210 | 16.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 226 | 16.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 272 | 16.89 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 304 | 16.94 | humidity | 90.0 | 270 | > th | dose independent | sin | 8 | NA |
| 308 | 16.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 320 | 16.96 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 399 | 17.05 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 424 | 17.07 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 465 | 17.12 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 10 |
| 473 | 17.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 494 | 17.15 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 496 | 17.15 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 12 |
| 526 | 17.17 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 534 | 17.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 542 | 17.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 546 | 17.19 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 565 | 17.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 568 | 17.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 571 | 17.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 577 | 17.20 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 578 | 17.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 589 | 17.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 593 | 17.21 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 594 | 17.21 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 617 | 17.22 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 632 | 17.23 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 635 | 17.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 636 | 17.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 637 | 17.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 638 | 17.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 6 |
| 640 | 17.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 9 |
| 643 | 17.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 650 | 17.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 654 | 17.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 675 | 17.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 681 | 17.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 682 | 17.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 683 | 17.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 684 | 17.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 686 | 17.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 729 | 17.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 743 | 17.30 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 761 | 17.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 762 | 17.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 766 | 17.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 767 | 17.31 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 769 | 17.31 | wind | 5.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 803 | 17.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 804 | 17.34 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 3 |
| 815 | 17.35 | humidity | 90.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 877 | 17.39 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 889 | 17.40 | humidity | 90.0 | 270 | < th | dose independent | sin | 8 | NA |
| 897 | 17.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 15 |
| 907 | 17.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 908 | 17.40 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 17 |
| 915 | 17.41 | humidity | 90.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 923 | 17.42 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 9 |
| 927 | 17.42 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 932 | 17.42 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 951 | 17.44 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 957 | 17.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 961 | 17.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 18 |
| 972 | 17.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 974 | 17.45 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 976 | 17.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 979 | 17.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 982 | 17.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 983 | 17.45 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 992 | 17.45 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 999 | 17.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |