Os01g0673900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ReMembR-H2 protein JR700.
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Os01g0673900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ReMembR-H2 protein JR700.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.3 | 0.201 | 9.62 | -0.22 | 0.748 | -0.929 | 0.202 | -0.138 | -0.0343 | 5.8 | 28.52 | 11 | -- | -- |
| 18.33 | 0.199 | 9.62 | -0.233 | 0.747 | -0.92 | 0.186 | -- | -0.0396 | 5.82 | 28.57 | 12 | -- | -- |
| 18.39 | 0.2 | 9.62 | -0.227 | 0.747 | -0.925 | -- | -0.0843 | -0.0368 | 5.79 | 28.5 | 11 | -- | -- |
| 18.4 | 0.2 | 9.62 | -0.242 | 0.747 | -0.925 | -- | -- | -0.0411 | 5.79 | 28.52 | 12 | -- | -- |
| 42.06 | 0.304 | 9.61 | -0.118 | -- | -0.771 | -- | -0.385 | 0.0561 | -- | 24.1 | 15 | -- | -- |
| 30.28 | 0.258 | 9.58 | -0.0205 | 0.623 | -- | 0.203 | -- | 0.154 | 7.37 | -- | -- | -- | -- |
| 30.39 | 0.258 | 9.58 | -0.0162 | 0.624 | -- | -- | -- | 0.154 | 7.34 | -- | -- | -- | -- |
| 42.31 | 0.304 | 9.62 | -0.169 | -- | -0.733 | -- | -- | 0.0434 | -- | 24.21 | 11 | -- | -- |
| 19.77 | 0.208 | 9.61 | -- | 0.721 | -0.822 | -- | -- | 0.00782 | 5.94 | 28.5 | 10 | -- | -- |
| 51.08 | 0.334 | 9.59 | -0.00569 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 30.4 | 0.258 | 9.58 | -- | 0.624 | -- | -- | -- | 0.155 | 7.34 | -- | -- | -- | -- |
| 42.94 | 0.306 | 9.62 | -- | -- | -0.671 | -- | -- | 0.0638 | -- | 24.5 | 2 | -- | -- |
| 51.08 | 0.334 | 9.59 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 2 | 18.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 18.53 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 4 | 18.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 18.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 7 | 18.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 9 | 18.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 14 | 18.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 16 | 18.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 18 | 18.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 19 | 18.98 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 21 | 19.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 27 | 19.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 33 | 19.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 34 | 19.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 49 | 19.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 53 | 19.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 56 | 19.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 67 | 19.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 124 | 19.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 157 | 19.64 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 162 | 19.66 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 176 | 19.69 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 185 | 19.70 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 214 | 19.74 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 240 | 19.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 242 | 19.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 247 | 19.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 250 | 19.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 287 | 19.83 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 288 | 19.83 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 317 | 19.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 343 | 19.86 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 769 | 20.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 874 | 20.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 882 | 20.04 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 913 | 20.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 983 | 20.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |