FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0670600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0193) R2 : 0.00223
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0411 (0.0407) R2dN8 : 0.00288 R2N8 : 0.00223
σ : 0.364
deviance : 60.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.99 0.358 3.06 0.149 0.248 -0.13 -0.569 0.748 0.0631 9.67 0.1798 62 -- --
58.81 0.36 3.07 0.106 0.256 -0.129 0.239 -- 0.051 9.61 0.1798 62 -- --
58.32 0.358 3.06 0.119 0.246 -0.116 -- 0.322 0.0526 9.21 0.1798 62 -- --
59 0.36 3.07 0.113 0.235 -0.107 -- -- 0.0506 9.13 0.1332 60 -- --
59.68 0.36 3.07 0.12 -- -0.00709 -- 0.46 0.0574 -- 0.91 209 -- --
59.29 0.361 3.07 0.104 0.156 -- -0.00515 -- 0.0503 7.16 -- -- -- --
59.29 0.361 3.07 0.104 0.156 -- -- -- 0.0503 7.18 -- -- -- --
59.08 0.358 3.07 0.121 -- -0.252 -- -- 0.0414 -- 0.0576 934 -- --
59.33 0.361 3.07 -- 0.227 -0.0972 -- -- 0.0381 8.98 0.1342 60 -- --
60.57 0.364 3.07 0.107 -- -- -- -- 0.053 -- -- -- -- --
59.58 0.361 3.07 -- 0.157 -- -- -- 0.0387 7.14 -- -- -- --
59.51 0.359 3.07 -- -- -0.234 -- -- 0.0492 -- 0.05004 931 -- --
60.87 0.364 3.08 -- -- -- -- -- 0.0411 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.26 radiation 10.0 10 < th dose independent rect. 9 1
5 47.36 radiation 10.0 10 < th dose dependent rect. 10 1
9 47.58 wind 1.0 10 < th dose dependent rect. 9 1
11 47.66 wind 1.0 30 < th dose independent rect. 9 1
56 52.73 humidity 80.0 10 > th dose dependent rect. 10 1
69 53.49 temperature 25.0 90 > th dose dependent rect. 1 4
70 53.50 temperature 25.0 90 > th dose dependent rect. 2 2
71 53.57 temperature 25.0 270 > th dose independent rect. 1 1
90 53.92 humidity 80.0 10 > th dose dependent rect. 9 3
97 54.05 atmosphere 1005.0 30 > th dose dependent rect. 2 3
125 54.44 atmosphere 1005.0 270 > th dose dependent rect. 1 2
133 54.56 temperature 25.0 90 > th dose independent rect. 8 2
141 54.65 humidity 80.0 90 > th dose independent rect. 8 2
144 54.70 humidity 80.0 10 > th dose independent rect. 9 1
200 54.99 radiation 1.0 43200 < th dose dependent rect. 3 1
248 55.29 atmosphere 995.0 30 > th dose independent rect. 10 23
257 55.34 temperature 25.0 90 > th dose independent rect. 5 5
263 55.36 atmosphere 1000.0 30 > th dose independent rect. 2 1
265 55.36 atmosphere 995.0 30 > th dose dependent rect. 2 1
270 55.37 wind 3.0 30 < th dose independent rect. 2 1
276 55.38 radiation 10.0 10 < th dose independent rect. 9 17
280 55.38 radiation 1.0 4320 < th dose dependent rect. 3 1
283 55.39 wind 9.0 1440 < th dose independent rect. 3 1
284 55.39 temperature 10.0 1440 > th dose independent rect. 3 1
287 55.39 temperature 30.0 1440 < th dose independent rect. 3 1
291 55.39 humidity 50.0 1440 > th dose independent rect. 3 1
300 55.39 atmosphere 995.0 1440 > th dose independent rect. 3 1
301 55.39 radiation 1.0 1440 < th dose independent rect. 3 1
323 55.39 temperature 10.0 1440 > th dose independent rect. 4 23
326 55.39 wind 7.0 30 < th dose dependent rect. 2 1
342 55.40 temperature 10.0 30 > th dose independent rect. 2 1
344 55.40 temperature 30.0 30 < th dose independent rect. 2 1
345 55.40 humidity 50.0 30 > th dose independent rect. 2 1
349 55.40 atmosphere 1010.0 30 < th dose independent rect. 2 1
351 55.40 radiation 1.0 30 < th dose independent rect. 2 1
357 55.40 precipitation 0.1 30 < th dose independent rect. 2 1
358 55.40 temperature 10.0 30 > th dose independent rect. 3 23
360 55.40 radiation 1.0 30 < th dose dependent rect. 2 1
365 55.40 precipitation 0.1 30 < th dose dependent rect. 2 1
367 55.41 humidity 50.0 30 > th dose dependent rect. 2 1
389 55.47 wind 1.0 30 > th dose independent rect. 2 1
391 55.47 atmosphere 1015.0 30 < th dose dependent rect. 2 1
396 55.49 temperature 30.0 30 < th dose dependent rect. 2 1
400 55.51 temperature 10.0 1440 > th dose independent rect. 10 1
403 55.51 humidity 90.0 30 < th dose independent rect. 9 1
404 55.51 atmosphere 995.0 1440 > th dose independent rect. 10 1
408 55.51 temperature 10.0 1440 > th dose independent rect. 11 23
411 55.51 atmosphere 1000.0 30 > th dose independent rect. 3 23
416 55.52 temperature 30.0 30 < th dose independent rect. 9 1
419 55.53 wind 9.0 30 < th dose independent rect. 9 1
420 55.53 temperature 10.0 30 > th dose independent rect. 9 1
422 55.53 humidity 50.0 30 > th dose independent rect. 9 1
423 55.53 atmosphere 995.0 30 > th dose independent rect. 9 1
424 55.53 atmosphere 1015.0 30 < th dose independent rect. 9 1
425 55.53 radiation 1.0 30 > th dose independent rect. 9 1
426 55.53 precipitation 0.1 30 < th dose independent rect. 9 1
427 55.53 wind 9.0 30 < th dose independent rect. 10 23
428 55.53 temperature 10.0 30 > th dose independent rect. 10 23
429 55.53 temperature 10.0 30 > th dose dependent rect. 9 1
430 55.53 precipitation 0.1 30 < th dose dependent rect. 9 1
460 55.59 atmosphere 995.0 30 > th dose dependent rect. 9 1
483 55.64 precipitation 0.1 1440 < th dose independent rect. 10 1
485 55.64 wind 1.0 10 < th dose independent rect. 6 4
489 55.64 precipitation 0.1 1440 < th dose dependent rect. 10 1
548 55.73 atmosphere 1005.0 30 > th dose independent rect. 2 3
550 55.73 wind 3.0 30 < th dose dependent rect. 2 6
560 55.77 precipitation 0.1 30 < th dose independent rect. 3 23
565 55.77 precipitation 0.1 30 < th dose dependent rect. 3 23
664 55.96 wind 1.0 30 > th dose independent rect. 9 1
689 55.99 precipitation 0.1 30 < th dose independent rect. 10 23
691 55.99 precipitation 0.1 30 < th dose dependent rect. 10 23
733 56.03 wind 3.0 30 < th dose dependent rect. 2 3
766 56.07 wind 9.0 30 < th dose independent rect. 3 23
891 56.21 wind 3.0 30 < th dose independent rect. 2 3
988 56.29 radiation 1.0 1440 > th dose independent rect. 10 1
989 56.29 humidity 90.0 270 > th dose independent rect. 6 2