Os01g0670500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0670500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.49 | 0.359 | 9.49 | 0.874 | 0.87 | 0.702 | -0.32 | 0.362 | -0.0352 | 21.6 | 10.31 | 10 | -- | -- |
| 58.73 | 0.357 | 9.49 | 0.86 | 0.884 | 0.698 | 0.0484 | -- | -0.0327 | 21.6 | 10.45 | 10 | -- | -- |
| 58.64 | 0.357 | 9.49 | 0.874 | 0.914 | 0.667 | -- | 0.184 | -0.0351 | 21.7 | 10.35 | 10 | -- | -- |
| 58.73 | 0.357 | 9.49 | 0.878 | 0.875 | 0.698 | -- | -- | -0.0352 | 21.6 | 10.46 | 10 | -- | -- |
| 74.76 | 0.403 | 9.46 | 0.869 | -- | 1.22 | -- | 0.0601 | -0.0232 | -- | 7.873 | 6 | -- | -- |
| 66.7 | 0.383 | 9.51 | 0.889 | 1.59 | -- | 0.115 | -- | -0.0608 | 22.6 | -- | -- | -- | -- |
| 66.75 | 0.383 | 9.51 | 0.885 | 1.59 | -- | -- | -- | -0.0611 | 22.6 | -- | -- | -- | -- |
| 74.77 | 0.403 | 9.46 | 0.877 | -- | 1.22 | -- | -- | -0.0236 | -- | 7.943 | 6 | -- | -- |
| 78.97 | 0.414 | 9.52 | -- | 0.87 | 0.699 | -- | -- | -0.116 | 21.8 | 9.953 | 10 | -- | -- |
| 222.33 | 0.697 | 9.47 | 0.914 | -- | -- | -- | -- | -0.0532 | -- | -- | -- | -- | -- |
| 87.38 | 0.437 | 9.53 | -- | 1.6 | -- | -- | -- | -0.16 | 22.7 | -- | -- | -- | -- |
| 94.37 | 0.452 | 9.49 | -- | -- | 1.24 | -- | -- | -0.126 | -- | 9.38 | 8 | -- | -- |
| 244.39 | 0.73 | 9.49 | -- | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.61 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 2 | 57.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 5 | 57.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 19 | 58.11 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 23 | 58.16 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 29 | 58.20 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 9 |
| 32 | 58.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 33 | 58.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 37 | 58.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 38 | 58.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 41 | 58.45 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 43 | 58.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 48 | 58.50 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 51 | 58.51 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 53 | 58.52 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 55 | 58.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 57 | 58.57 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 62 | 58.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 63 | 58.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 66 | 58.72 | radiation | 10.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 68 | 58.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 70 | 58.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 77 | 58.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 91 | 58.89 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 9 |
| 102 | 58.97 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 113 | 59.02 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 18 |
| 133 | 59.08 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 149 | 59.15 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 161 | 59.18 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 177 | 59.22 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 187 | 59.26 | radiation | 1.0 | 30 | > th | dose independent | sin | 2 | NA |
| 201 | 59.30 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 20 |
| 202 | 59.30 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 203 | 59.31 | radiation | 1.0 | 30 | < th | dose independent | sin | 2 | NA |
| 228 | 59.36 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 233 | 59.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 237 | 59.38 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 23 |
| 250 | 59.43 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 254 | 59.44 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 257 | 59.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 272 | 59.49 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 280 | 59.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 1 |
| 290 | 59.52 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 309 | 59.57 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 323 | 59.61 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 325 | 59.61 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 388 | 59.71 | humidity | 80.0 | 720 | > th | dose independent | rect. | 24 | 13 |
| 394 | 59.72 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 415 | 59.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 417 | 59.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 13 |
| 429 | 59.77 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 435 | 59.78 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 437 | 59.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 443 | 59.79 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 4 | NA |
| 447 | 59.79 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 4 | NA |
| 449 | 59.79 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 456 | 59.80 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 4 | NA |
| 503 | 59.85 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 7 | 6 |
| 504 | 59.85 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 524 | 59.87 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 528 | 59.88 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 531 | 59.88 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 539 | 59.89 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 7 | 4 |
| 545 | 59.89 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 557 | 59.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 21 |
| 560 | 59.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 616 | 59.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 16 |
| 620 | 59.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 16 |
| 622 | 59.96 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 646 | 59.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 16 |
| 672 | 60.01 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 7 |
| 684 | 60.02 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 717 | 60.05 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 4 | NA |
| 735 | 60.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 744 | 60.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 18 |
| 752 | 60.08 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 758 | 60.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 778 | 60.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 793 | 60.12 | radiation | 20.0 | 30 | < th | dose independent | rect. | 12 | 17 |
| 848 | 60.16 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 865 | 60.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 873 | 60.18 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 886 | 60.19 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 891 | 60.19 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 902 | 60.19 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 932 | 60.21 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 937 | 60.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 15 |