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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0670400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0407) R2 : 0.121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.78 (0.77) R2dE : 0.109 R2E : 0.108
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.199 (0.0857) R2dN8 : 0.0134 R2N8 : 0.0121
σ : 0.767
deviance : 269.33
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 86
memory length : 4
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.82
open length of G : 2.12

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
264.67 0.764 2.88 0.268 0.15 3.73 0.156 8.85 -0.205 10.8 91 8 3.62 1.4
267.63 0.762 2.88 0.27 0.17 5.24 0.0815 -- -0.188 11.7 89.87 3 3.8 1.2
264.71 0.758 2.88 0.274 0.151 3.71 -- 8.88 -0.205 10.4 91.03 5 3.58 1.53
267.49 0.762 2.88 0.258 0.153 5.42 -- -- -0.191 10.5 89.79 3 3.81 1.34
266.1 0.76 2.89 0.271 -- 3.7 -- 8.89 -0.206 -- 91.04 5 3.54 1.59
299.04 0.811 2.88 0.271 0.172 -- 0.0651 -- -0.186 8.63 -- -- -- --
299.05 0.81 2.88 0.273 0.172 -- -- -- -0.186 8.56 -- -- -- --
267.95 0.766 2.88 0.228 -- 5.74 -- -- -0.174 -- 86 4 3.82 2.12
267.85 0.766 2.88 -- 0.158 5.78 -- -- -0.199 9.61 86 4 3.83 1.33
300.71 0.81 2.88 0.274 -- -- -- -- -0.185 -- -- -- -- --
301.02 0.812 2.88 -- 0.173 -- -- -- -0.217 8.44 -- -- -- --
269.33 0.767 2.89 -- -- 5.78 -- -- -0.199 -- 86 4 3.82 2.12
302.69 0.812 2.89 -- -- -- -- -- -0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.46 humidity 90 10 < th dose dependent rect. 3 2
5 266.44 humidity 80 90 < th dose independent rect. 2 2
6 266.45 humidity 80 90 < th dose dependent rect. 2 2
11 267.46 humidity 80 10 < th dose independent rect. 3 1
39 270.78 temperature 25 90 < th dose dependent rect. 14 1
62 276.74 humidity 80 90 < th dose dependent rect. 2 5
63 277.62 wind 3 10 > th dose dependent rect. 3 1
67 278.34 radiation 1 10 < th dose independent rect. 15 2
91 280.13 humidity 90 90 > th dose independent rect. 14 1
94 280.13 humidity 90 90 > th dose dependent rect. 14 1
106 280.38 temperature 25 90 < th dose independent rect. 14 1
113 280.54 humidity 80 270 < th dose dependent rect. 24 4
120 280.66 humidity 80 10 > th dose dependent rect. 16 1
154 281.82 temperature 20 90 < th dose dependent rect. 2 1
156 281.88 temperature 25 10 > th dose independent rect. 5 1
184 282.65 radiation 10 90 < th dose dependent rect. 15 1
190 282.80 atmosphere 995 4320 > th dose independent rect. 9 5
226 283.53 humidity 90 1440 > th dose independent rect. 4 2
240 283.99 atmosphere 995 4320 < th dose dependent rect. 14 1
257 284.18 humidity 80 10 < th dose independent rect. 24 5
277 284.29 atmosphere 995 4320 < th dose independent rect. 14 1
296 284.47 humidity 90 1440 > th dose independent rect. 2 5
304 284.55 temperature 20 10 < th dose dependent rect. 12 5
314 284.67 humidity 80 1440 < th dose independent rect. 22 1
335 284.74 temperature 20 10 < th dose dependent rect. 8 9
345 284.76 atmosphere 995 4320 > th dose independent rect. 5 9
393 285.14 humidity 50 1440 > th dose dependent rect. 2 2
404 285.28 radiation 1 4320 < th dose dependent rect. 23 1
421 285.49 atmosphere 995 4320 > th dose independent rect. 12 5
425 285.51 atmosphere 995 4320 > th dose independent rect. 15 2
448 285.76 wind 3 10 > th dose independent rect. 3 1
450 285.78 wind 7 10 > th dose dependent rect. 12 1
476 285.85 atmosphere 1005 30 > th dose dependent rect. 15 1
539 286.26 humidity 80 1440 > th dose independent rect. 22 6
546 286.36 humidity 90 1440 > th dose dependent rect. 4 2
570 286.53 humidity 90 1440 < th dose independent rect. 4 1
580 286.60 humidity 90 1440 < th dose independent rect. 3 4
586 286.65 humidity 80 1440 > th dose independent rect. 22 1
595 286.70 humidity 80 1440 < th dose independent rect. 22 6
743 287.51 atmosphere 995 4320 > th dose independent rect. 12 9
761 287.59 humidity 90 1440 < th dose dependent rect. 23 5
763 287.60 radiation 1 10 < th dose independent rect. 6 11
768 287.62 wind 7 4320 > th dose independent rect. 18 2
885 288.07 temperature 30 1440 < th dose independent rect. 18 1
900 288.12 wind 5 4320 > th dose dependent rect. 18 2
903 288.15 temperature 30 1440 < th dose independent rect. 18 11
911 288.18 humidity 90 1440 > th dose independent sin 7 NA
922 288.21 wind 7 720 > th dose independent rect. 20 1
928 288.24 wind 7 720 > th dose dependent rect. 20 1
936 288.27 temperature 20 270 < th dose dependent rect. 24 1
942 288.30 wind 5 4320 < th dose independent rect. 17 4
951 288.33 temperature 30 1440 > th dose independent sin 13 NA
970 288.41 wind 7 4320 < th dose independent rect. 18 2
979 288.44 atmosphere 995 4320 > th dose independent rect. 14 7