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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0669100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.11 (0.0617) R2 : 0.69
β1 : -1.22 (0.387) R2dD : 0.0347 R2D : 0.134
β2 : 1.71 (0.125) R2dC : 0.15 R2C : -0.0357
β3 : -5.12 (0.319) R2dE : 0.493 R2E : 0.208
β4 : -2.74 (0.472) R2dD*C : 0.0247 R2D*C : 0.00492
β5 : 12.7 (2.39) R2dD*E : 0.116 R2D*E : 0.036
γ1 : -1.06 (0.126) R2dN8 : 0.0992 R2N8 : 0.087
σ : 0.895
deviance : 362.73
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_____
C
peak time of C : 2.03
E
wheather : temperature
threshold : 25.24
memory length : 699
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.71
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
362.73 0.895 6.11 -1.22 1.71 -5.12 -2.74 12.7 -1.06 2.03 25.24 699 5.71 --
386.47 0.916 6.26 -3.1 1.69 -3.84 -2.71 -- -1.4 2.36 25.03 701 5.9 --
389.92 0.92 6.12 -1.22 1.65 -5.12 -- 12.3 -1.12 1.95 25.4 695 5.62 --
399.54 0.931 6.31 -2.96 1.72 -3.8 -- -- -1.46 2.31 25.22 725 6.42 --
480.91 1.02 6.05 -0.832 -- -4.51 -- 13.8 -1.05 -- 25.6 649 4.15 --
650.32 1.2 6.34 -3.68 0.896 -- -2.93 -- -1.6 3.16 -- -- -- --
676.87 1.22 6.32 -3.62 0.912 -- -- -- -1.58 3.82 -- -- -- --
503.59 1.05 6.38 -2.9 -- -3.65 -- -- -1.55 -- 25.7 622 4.39 --
623.8 1.16 6.21 -- 1.88 -4.34 -- -- -1.07 2.06 25.1 751 7.09 --
722.66 1.26 6.33 -3.59 -- -- -- -- -1.56 -- -- -- -- --
1022.94 1.5 6.23 -- 0.841 -- -- -- -1.18 3.87 -- -- -- --
683.48 1.22 6.31 -- -- -3.47 -- -- -0.989 -- 23.27 2364 19.6 --
1061.84 1.52 6.24 -- -- -- -- -- -1.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.99 temperature 25 14400 > th dose dependent rect. 11 3
9 334.24 temperature 25 14400 > th dose independent rect. 8 1
13 334.80 temperature 25 14400 < th dose independent rect. 8 1
41 337.75 temperature 25 14400 > th dose dependent rect. 2 13
83 338.75 temperature 25 14400 > th dose dependent sin 1 NA
104 339.14 temperature 25 14400 > th dose independent rect. 2 10
120 339.36 temperature 25 14400 > th dose independent rect. 5 7
179 340.16 temperature 25 14400 < th dose independent rect. 3 9
187 340.20 temperature 25 14400 < th dose independent rect. 5 6
280 341.15 temperature 25 14400 > th dose independent sin 5 NA
315 341.32 temperature 25 14400 > th dose dependent no NA NA
346 341.69 temperature 25 14400 > th dose independent rect. 17 21
401 342.84 temperature 25 14400 > th dose independent rect. 24 21
428 343.17 temperature 25 14400 < th dose independent sin 5 NA
446 343.36 temperature 25 14400 > th dose independent rect. 7 21
475 343.82 temperature 25 14400 > th dose independent no NA NA
489 343.93 temperature 25 14400 < th dose independent rect. 17 20
528 344.29 temperature 25 14400 > th dose independent rect. 10 23
577 344.87 temperature 25 14400 < th dose independent rect. 24 21
663 345.74 temperature 25 14400 < th dose independent rect. 7 21
698 346.03 temperature 25 14400 < th dose independent no NA NA
708 346.08 temperature 25 14400 < th dose independent rect. 3 23
777 346.55 temperature 25 14400 < th dose independent rect. 10 23