Os01g0668900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0668900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.58 | 0.494 | 3.99 | 1.67 | 0.716 | 1.34 | 0.539 | -1.17 | 0.135 | 10.6 | 31.39 | 1500 | -- | -- |
| 110.46 | 0.49 | 4.01 | 1.49 | 0.611 | 1.3 | 0.565 | -- | 0.127 | 10.5 | 26.38 | 2364 | -- | -- |
| 111.77 | 0.492 | 3.99 | 1.69 | 0.715 | 1.35 | -- | -1.15 | 0.137 | 10.6 | 31.42 | 1518 | -- | -- |
| 111.88 | 0.493 | 4.01 | 1.53 | 0.602 | 1.3 | -- | -- | 0.136 | 10.4 | 26.54 | 2373 | -- | -- |
| 131.9 | 0.535 | 3.99 | 1.88 | -- | 1.45 | -- | -1.64 | 0.182 | -- | 33.1 | 2275 | -- | -- |
| 142.03 | 0.559 | 4.09 | 0.975 | 0.733 | -- | 0.581 | -- | -0.208 | 10.7 | -- | -- | -- | -- |
| 143.43 | 0.561 | 4.09 | 0.999 | 0.729 | -- | -- | -- | -0.206 | 10.7 | -- | -- | -- | -- |
| 123.21 | 0.517 | 4.03 | 1.49 | -- | 1.8 | -- | -- | 0.135 | -- | 30.4 | 834 | -- | -- |
| 158.62 | 0.59 | 4.08 | -- | 0.922 | 0.893 | -- | -- | -0.186 | 11.6 | 31.25 | 1241 | -- | -- |
| 176.31 | 0.62 | 4.11 | 0.984 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 169.72 | 0.609 | 4.11 | -- | 0.722 | -- | -- | -- | -0.318 | 10.7 | -- | -- | -- | -- |
| 174.69 | 0.616 | 4.09 | -- | -- | 1.23 | -- | -- | -0.151 | -- | 32.3 | 779 | -- | -- |
| 201.87 | 0.663 | 4.13 | -- | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 4 | 104.06 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 5 | 104.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 9 | 104.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 10 | 104.38 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 12 | 104.58 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 17 | 104.85 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 23 | 105.19 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 42 | 106.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 61 | 106.80 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 62 | 106.83 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 70 | 107.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 72 | 107.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 129 | 107.66 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 166 | 107.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 167 | 107.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 198 | 108.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 203 | 108.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 225 | 108.16 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 231 | 108.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 248 | 108.23 | wind | 9 | 43200 | > th | dose independent | sin | 12 | NA |
| 276 | 108.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 307 | 108.39 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 20 |
| 332 | 108.46 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 358 | 108.52 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 373 | 108.58 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 395 | 108.64 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 403 | 108.66 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 417 | 108.71 | wind | 9 | 43200 | < th | dose independent | sin | 12 | NA |
| 441 | 108.76 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 457 | 108.79 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 459 | 108.80 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 468 | 108.81 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 473 | 108.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 614 | 109.03 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 654 | 109.09 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 692 | 109.16 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 729 | 109.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 746 | 109.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 755 | 109.31 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 790 | 109.38 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 820 | 109.45 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 863 | 109.52 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 901 | 109.57 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 951 | 109.63 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 967 | 109.66 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 986 | 109.68 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 998 | 109.69 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 17 |