Os01g0668700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0668700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.87 | 0.401 | 7.42 | 1.54 | 1.21 | -1.21 | -1.69 | 3.17 | 0.474 | 23.5 | 20.14 | 2195 | -- | -- |
| 80.44 | 0.418 | 7.51 | 0.95 | 1.19 | -1.14 | -1.45 | -- | 0.285 | 23.7 | 14.96 | 6908 | -- | -- |
| 84 | 0.427 | 7.43 | 1.51 | 1.16 | -1.16 | -- | 2.9 | 0.459 | 23.2 | 20.1 | 1953 | -- | -- |
| 88.97 | 0.439 | 7.49 | 1.04 | 1.12 | -1.37 | -- | -- | 0.414 | 23.6 | 10.04 | 8572 | -- | -- |
| 118.34 | 0.509 | 7.42 | 1.32 | -- | -1.78 | -- | 3.92 | 0.455 | -- | 18.6 | 4571 | -- | -- |
| 109.28 | 0.49 | 7.58 | 0.252 | 1.06 | -- | -1.57 | -- | -0.00958 | 23.7 | -- | -- | -- | -- |
| 119.62 | 0.512 | 7.58 | 0.317 | 1.07 | -- | -- | -- | -0.00121 | 23.4 | -- | -- | -- | -- |
| 132.71 | 0.539 | 7.5 | 0.712 | -- | -2.02 | -- | -- | 0.279 | -- | 10.04 | 8572 | -- | -- |
| 101.4 | 0.469 | 7.56 | -- | 1.2 | -0.805 | -- | -- | 0.107 | 23.5 | 21 | 2347 | -- | -- |
| 191.43 | 0.647 | 7.56 | 0.345 | -- | -- | -- | -- | 0.00996 | -- | -- | -- | -- | -- |
| 122.27 | 0.517 | 7.59 | -- | 1.07 | -- | -- | -- | -0.0365 | 23.5 | -- | -- | -- | -- |
| 145.33 | 0.563 | 7.52 | -- | -- | -1.79 | -- | -- | 0.174 | -- | 10.04 | 8572 | -- | -- |
| 194.58 | 0.651 | 7.56 | -- | -- | -- | -- | -- | -0.0284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.07 | temperature | 30 | 10 | < th | dose dependent | sin | 8 | NA |
| 2 | 69.20 | temperature | 15 | 10 | > th | dose dependent | sin | 8 | NA |
| 5 | 69.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 7 | 69.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 12 | 69.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 15 | 69.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 26 | 70.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 41 | 70.66 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 45 | 70.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 52 | 70.92 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 58 | 71.12 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 64 | 71.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 70 | 71.31 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 90 | 71.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 110 | 71.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 112 | 71.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 125 | 72.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 130 | 72.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 132 | 72.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 161 | 72.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 164 | 72.50 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 173 | 72.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 216 | 72.83 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 221 | 72.90 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 247 | 73.00 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 291 | 73.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 304 | 73.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 317 | 73.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 332 | 73.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 365 | 73.43 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 368 | 73.44 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 385 | 73.52 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 391 | 73.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 395 | 73.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 424 | 73.60 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 449 | 73.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 459 | 73.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 468 | 73.70 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 515 | 73.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 528 | 73.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 539 | 73.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 543 | 73.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 562 | 73.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 17 |
| 567 | 73.88 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 590 | 73.92 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 600 | 73.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 638 | 73.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 694 | 74.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 695 | 74.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 706 | 74.11 | wind | 5 | 43200 | > th | dose independent | sin | 22 | NA |
| 715 | 74.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 720 | 74.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 729 | 74.13 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 742 | 74.15 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 750 | 74.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 771 | 74.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 794 | 74.20 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 830 | 74.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 851 | 74.24 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 903 | 74.30 | temperature | 25 | 4320 | < th | dose independent | sin | 19 | NA |
| 934 | 74.33 | temperature | 20 | 4320 | > th | dose dependent | sin | 19 | NA |
| 957 | 74.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 5 |