FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0667400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0189) R2 : 0.00216
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0395 (0.0397) R2dN8 : 0.00279 R2N8 : 0.00216
σ : 0.355
deviance : 57.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.88 0.348 3.08 0.192 0.327 -0.251 -1.25 1.25 0.0849 11.3 0.3468 112 -- --
56.21 0.349 3.08 0.101 0.301 -0.228 0.0772 -- 0.0959 11.1 0.04006 119 -- --
56.19 0.352 3.09 0.111 0.246 -0.149 -- 0.208 0.0505 9.87 0.3596 177 -- --
56.17 0.349 3.08 0.111 0.322 -0.253 -- -- 0.0799 11.4 0.04999 124 -- --
57.25 0.352 3.09 0.106 -- -0.0362 -- 0.265 0.0529 -- 0.22 281 -- --
56.91 0.354 3.09 0.101 0.118 -- -0.186 -- 0.0477 6.53 -- -- -- --
56.97 0.353 3.09 0.0993 0.118 -- -- -- 0.0486 7.11 -- -- -- --
56.89 0.351 3.11 0.058 -- -0.154 -- -- 0.0447 -- 0.0507 933 -- --
56.53 0.35 3.09 -- 0.317 -0.245 -- -- 0.054 11.3 0.14 119 -- --
57.71 0.355 3.09 0.102 -- -- -- -- 0.0507 -- -- -- -- --
57.23 0.354 3.09 -- 0.119 -- -- -- 0.0376 7.06 -- -- -- --
57.05 0.352 3.1 -- -- -0.167 -- -- 0.0412 -- 0.05 891 -- --
57.98 0.355 3.1 -- -- -- -- -- 0.0395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.77 humidity 90.0 10 < th dose dependent rect. 4 1
3 52.99 humidity 90.0 10 < th dose independent rect. 3 2
6 53.35 atmosphere 1000.0 30 > th dose independent rect. 23 23
7 53.41 temperature 25.0 90 > th dose independent rect. 2 3
11 53.47 atmosphere 1005.0 10 > th dose dependent rect. 4 1
12 53.49 temperature 30.0 10 < th dose dependent rect. 4 1
15 53.52 wind 5.0 10 < th dose independent rect. 4 1
20 53.55 wind 7.0 10 < th dose dependent rect. 4 1
22 53.56 atmosphere 1005.0 10 > th dose independent rect. 4 1
24 53.57 temperature 10.0 10 > th dose independent rect. 4 1
26 53.57 temperature 30.0 10 < th dose independent rect. 4 1
27 53.57 humidity 50.0 10 > th dose independent rect. 4 1
31 53.57 atmosphere 995.0 10 > th dose independent rect. 4 1
32 53.57 atmosphere 1010.0 10 < th dose independent rect. 4 1
34 53.57 radiation 1.0 10 < th dose independent rect. 4 1
39 53.57 temperature 10.0 10 > th dose independent rect. 5 23
40 53.57 radiation 1.0 10 < th dose dependent rect. 4 1
48 53.59 precipitation 0.1 10 < th dose independent rect. 4 1
49 53.59 precipitation 0.1 10 < th dose dependent rect. 4 1
50 53.62 wind 1.0 10 > th dose independent rect. 4 1
51 53.62 humidity 50.0 10 > th dose dependent rect. 4 1
58 53.65 temperature 25.0 90 > th dose dependent rect. 2 3
89 53.67 atmosphere 1015.0 30 < th dose dependent rect. 4 1
94 53.69 temperature 10.0 10 > th dose dependent rect. 4 1
102 53.75 wind 7.0 1440 < th dose independent rect. 5 1
104 53.75 temperature 10.0 1440 > th dose independent rect. 5 1
107 53.75 temperature 30.0 1440 < th dose independent rect. 5 1
111 53.75 humidity 50.0 1440 > th dose independent rect. 5 1
120 53.75 atmosphere 995.0 1440 > th dose independent rect. 5 1
121 53.75 atmosphere 1015.0 1440 < th dose independent rect. 5 1
122 53.75 radiation 20.0 1440 < th dose independent rect. 5 1
131 53.75 temperature 10.0 1440 > th dose independent rect. 6 23
139 53.79 temperature 25.0 90 > th dose independent rect. 4 1
140 53.79 wind 9.0 30 < th dose independent rect. 5 23
141 53.79 temperature 25.0 90 > th dose dependent rect. 3 1
146 53.80 temperature 25.0 10 > th dose independent rect. 4 1
161 53.82 wind 1.0 30 > th dose dependent rect. 4 1
172 53.93 atmosphere 1000.0 10 > th dose independent rect. 5 23
181 54.02 radiation 10.0 43200 < th dose dependent rect. 23 1
185 54.04 temperature 25.0 10 > th dose dependent rect. 22 1
188 54.06 temperature 15.0 30 > th dose independent rect. 23 23
191 54.09 precipitation 0.1 10 < th dose independent rect. 5 23
193 54.09 precipitation 0.1 10 < th dose dependent rect. 5 23
194 54.10 wind 9.0 1440 < th dose independent rect. 23 1
195 54.10 temperature 25.0 30 > th dose independent rect. 22 1
196 54.10 temperature 10.0 1440 > th dose independent rect. 23 1
199 54.10 temperature 30.0 1440 < th dose independent rect. 23 1
203 54.10 humidity 50.0 1440 > th dose independent rect. 23 1
213 54.10 atmosphere 995.0 1440 > th dose independent rect. 23 1
214 54.10 radiation 1.0 1440 < th dose independent rect. 23 1
234 54.10 wind 9.0 30 < th dose independent rect. 23 23
235 54.10 temperature 10.0 1440 > th dose independent rect. 24 23
240 54.10 radiation 1.0 1440 < th dose dependent rect. 23 1
246 54.11 wind 1.0 30 > th dose independent rect. 22 1
247 54.11 wind 3.0 30 < th dose independent rect. 22 1
251 54.11 humidity 90.0 30 < th dose independent rect. 22 1
252 54.11 atmosphere 1005.0 30 > th dose independent rect. 22 1
253 54.11 temperature 10.0 30 > th dose dependent rect. 22 1
255 54.11 atmosphere 1000.0 30 > th dose dependent rect. 22 1
260 54.12 temperature 10.0 30 > th dose independent rect. 22 1
262 54.12 temperature 30.0 30 < th dose independent rect. 22 1
263 54.12 humidity 50.0 30 > th dose independent rect. 22 1
267 54.12 atmosphere 995.0 30 > th dose independent rect. 22 1
269 54.12 atmosphere 1010.0 30 < th dose independent rect. 22 1
271 54.12 radiation 1.0 30 < th dose independent rect. 22 1
276 54.12 precipitation 0.1 30 < th dose independent rect. 22 1
278 54.12 wind 5.0 30 < th dose dependent rect. 22 1
282 54.12 humidity 50.0 30 > th dose dependent rect. 22 1
285 54.12 humidity 90.0 30 < th dose dependent rect. 22 1
287 54.12 radiation 1.0 30 < th dose dependent rect. 22 1
294 54.12 precipitation 0.1 30 < th dose dependent rect. 22 1
296 54.13 atmosphere 1015.0 30 < th dose dependent rect. 22 1
301 54.14 wind 1.0 30 > th dose dependent rect. 22 1
309 54.15 temperature 30.0 30 < th dose dependent rect. 22 1
361 54.22 precipitation 0.1 1440 < th dose independent rect. 23 1
362 54.22 temperature 25.0 270 > th dose dependent rect. 1 1
365 54.22 precipitation 0.1 1440 < th dose dependent rect. 23 1
366 54.23 precipitation 0.1 30 < th dose independent rect. 23 23
368 54.23 precipitation 0.1 30 < th dose dependent rect. 23 23
375 54.29 temperature 25.0 10 > th dose independent rect. 22 8
400 54.49 radiation 1.0 90 < th dose dependent rect. 1 23
405 54.55 temperature 25.0 720 > th dose dependent rect. 5 3
422 54.67 humidity 50.0 30 > th dose independent rect. 23 23
434 54.74 atmosphere 1000.0 90 > th dose independent rect. 5 14
436 54.75 radiation 1.0 90 < th dose independent rect. 1 23
438 54.75 atmosphere 1005.0 270 > th dose dependent rect. 1 1
449 54.81 radiation 1.0 90 < th dose dependent rect. 7 22
454 54.83 radiation 1.0 30 < th dose dependent rect. 19 23
456 54.84 atmosphere 1000.0 720 > th dose independent rect. 19 16
457 54.85 atmosphere 1000.0 720 > th dose independent rect. 5 6
462 54.87 radiation 1.0 90 < th dose dependent rect. 9 20
466 54.88 radiation 1.0 90 < th dose independent rect. 7 22
467 54.89 temperature 25.0 720 > th dose independent rect. 6 1
474 54.92 radiation 1.0 90 < th dose dependent rect. 12 17
482 54.95 atmosphere 1000.0 720 > th dose independent rect. 3 8
485 54.95 radiation 1.0 90 < th dose independent rect. 9 20
491 54.97 radiation 1.0 30 < th dose independent rect. 19 23
492 54.97 radiation 1.0 90 < th dose dependent rect. 17 23
497 54.99 temperature 10.0 30 > th dose dependent rect. 23 23
499 55.00 atmosphere 1000.0 720 > th dose independent rect. 23 8
500 55.00 radiation 1.0 90 < th dose independent rect. 12 17
515 55.04 radiation 1.0 90 < th dose dependent no NA NA
517 55.04 temperature 10.0 90 > th dose dependent rect. 5 14
519 55.04 radiation 1.0 90 < th dose dependent rect. 9 23
520 55.04 radiation 1.0 90 < th dose dependent rect. 12 23
531 55.06 radiation 1.0 90 < th dose dependent rect. 15 23
533 55.07 atmosphere 1000.0 30 > th dose independent rect. 5 21
534 55.07 radiation 1.0 10 < th dose independent rect. 19 21
551 55.08 temperature 25.0 4320 > th dose dependent rect. 6 1
573 55.11 wind 1.0 90 > th dose independent rect. 19 10
587 55.13 radiation 1.0 10 < th dose dependent rect. 4 10
597 55.14 radiation 1.0 90 < th dose dependent rect. 21 23
611 55.18 humidity 90.0 270 < th dose independent rect. 1 1
613 55.18 radiation 1.0 10 < th dose independent rect. 4 10
623 55.19 atmosphere 1000.0 90 < th dose dependent rect. 12 3
633 55.20 atmosphere 1000.0 270 < th dose dependent rect. 6 9
634 55.20 atmosphere 1000.0 90 < th dose dependent rect. 6 11
638 55.20 temperature 10.0 30 > th dose dependent rect. 5 23
640 55.21 temperature 30.0 270 < th dose independent rect. 6 23
645 55.21 temperature 10.0 90 > th dose dependent rect. 5 16
655 55.23 temperature 15.0 90 > th dose independent rect. 5 14
656 55.23 radiation 1.0 10 < th dose independent rect. 19 19
660 55.23 radiation 1.0 90 < th dose independent rect. 17 23
664 55.23 atmosphere 1000.0 10 < th dose dependent rect. 7 11
668 55.23 temperature 10.0 30 > th dose dependent rect. 5 21
675 55.24 temperature 20.0 30 > th dose dependent rect. 22 7
679 55.25 wind 9.0 90 < th dose independent rect. 5 14
681 55.25 atmosphere 1000.0 270 < th dose dependent rect. 9 5
693 55.26 atmosphere 1000.0 90 > th dose independent rect. 5 16
695 55.26 atmosphere 1000.0 10 < th dose dependent sin 23 NA
699 55.26 radiation 1.0 10 < th dose dependent rect. 4 4
716 55.28 radiation 1.0 90 > th dose independent no NA NA
717 55.28 radiation 1.0 90 < th dose independent no NA NA
720 55.28 humidity 90.0 270 < th dose independent rect. 1 4
723 55.28 radiation 1.0 90 > th dose independent rect. 4 15
759 55.28 humidity 50.0 30 > th dose independent rect. 5 23
764 55.28 radiation 1.0 90 > th dose independent rect. 16 23
771 55.28 radiation 1.0 90 < th dose independent rect. 12 23
776 55.29 humidity 50.0 270 < th dose independent rect. 13 2
780 55.29 humidity 50.0 270 < th dose dependent rect. 13 2
784 55.29 atmosphere 1000.0 10 < th dose dependent rect. 7 9
787 55.29 atmosphere 995.0 30 > th dose dependent rect. 5 14
808 55.30 radiation 1.0 90 < th dose independent rect. 15 23
821 55.31 radiation 1.0 10 < th dose independent rect. 4 4
835 55.31 radiation 10.0 10 < th dose independent rect. 23 23
842 55.31 radiation 1.0 30 < th dose dependent rect. 19 11
843 55.31 radiation 1.0 30 < th dose dependent rect. 19 13
870 55.32 radiation 1.0 10 < th dose independent rect. 19 11
901 55.33 atmosphere 1000.0 90 > th dose independent rect. 23 10
919 55.34 wind 7.0 90 < th dose independent rect. 19 10
922 55.34 radiation 1.0 10 < th dose independent rect. 19 13
936 55.34 radiation 40.0 90 < th dose dependent rect. 10 19
960 55.35 humidity 80.0 14400 < th dose dependent rect. 2 7
963 55.35 radiation 1.0 90 < th dose dependent rect. 17 12
968 55.36 atmosphere 1000.0 270 < th dose independent rect. 9 5
984 55.37 atmosphere 1000.0 720 < th dose independent rect. 6 1
988 55.37 atmosphere 1000.0 270 < th dose independent rect. 11 3
998 55.37 radiation 1.0 90 < th dose independent rect. 21 23