Os01g0666900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L18a.
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Os01g0666900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L18a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.59 | 0.408 | 12.6 | -0.00113 | 0.76 | 0.888 | 0.894 | -0.525 | -0.0363 | 18.6 | 19.8 | 2771 | -- | -- |
| 76.07 | 0.406 | 12.6 | 0.0955 | 0.743 | 0.953 | 0.918 | -- | -0.0235 | 18.6 | 19.8 | 2790 | -- | -- |
| 77.33 | 0.41 | 12.6 | -0.00822 | 0.727 | 0.88 | -- | -0.476 | -0.0375 | 18.5 | 20.5 | 2730 | -- | -- |
| 78.04 | 0.411 | 12.6 | 0.0719 | 0.757 | 0.915 | -- | -- | -0.0316 | 18.4 | 20.6 | 2730 | -- | -- |
| 106.18 | 0.48 | 12.6 | 0.0796 | -- | 0.896 | -- | -0.324 | -0.0309 | -- | 20.57 | 2070 | -- | -- |
| 94.34 | 0.455 | 12.5 | 0.608 | 0.735 | -- | 1.05 | -- | 0.221 | 18.8 | -- | -- | -- | -- |
| 97.13 | 0.462 | 12.5 | 0.591 | 0.739 | -- | -- | -- | 0.224 | 18.7 | -- | -- | -- | -- |
| 106.37 | 0.48 | 12.6 | 0.138 | -- | 0.924 | -- | -- | -0.017 | -- | 20.5 | 2045 | -- | -- |
| 78.16 | 0.412 | 12.6 | -- | 0.764 | 0.968 | -- | -- | -0.0471 | 18.5 | 20.6 | 2745 | -- | -- |
| 125.62 | 0.524 | 12.5 | 0.574 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 106.34 | 0.482 | 12.6 | -- | 0.731 | -- | -- | -- | 0.158 | 18.8 | -- | -- | -- | -- |
| 106.8 | 0.481 | 12.6 | -- | -- | 0.962 | -- | -- | -0.025 | -- | 20.6 | 2090 | -- | -- |
| 134.32 | 0.541 | 12.5 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 2 | 71.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 7 | 72.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 21 | 73.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 23 | 73.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 26 | 73.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 36 | 73.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 44 | 73.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 111 | 73.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 123 | 74.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 151 | 74.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 161 | 74.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 168 | 74.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 182 | 74.46 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 184 | 74.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 238 | 74.65 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 247 | 74.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 343 | 75.01 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 354 | 75.06 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 830 | 76.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |