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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0666700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome b561 / ferric reductase transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0254) R2 : 0.00164
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0463 (0.0536) R2dN8 : 0.00211 R2N8 : 0.00164
σ : 0.479
deviance : 105.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.31 0.463 2.89 0.0851 0.0264 0.424 0.51 1.91 0.0733 20.5 1.182 7 -- --
99 0.463 2.89 0.0709 0.0282 0.739 0.511 -- 0.0745 20.9 1.1 8 -- --
98.11 0.461 2.88 0.0628 0.0338 0.431 -- 1.93 0.0729 19.4 1.223 6 -- --
99.93 0.466 2.9 0.0374 0.0483 0.789 -- -- 0.0719 19.6 1.1 8 -- --
98.17 0.461 2.88 0.0713 -- 0.412 -- 2 0.0738 -- 1.213 6 -- --
103.52 0.477 2.9 0.113 0.0487 -- 0.591 -- 0.0579 22.9 -- -- -- --
104.9 0.48 2.9 0.0878 0.0588 -- -- -- 0.055 1.65 -- -- -- --
100.06 0.466 2.89 0.0439 -- 0.773 -- -- 0.0742 -- 1.1 8 -- --
99.95 0.466 2.9 -- 0.0573 0.815 -- -- 0.071 18.1 1.1 8 -- --
105.11 0.479 2.9 0.0902 -- -- -- -- 0.0563 -- -- -- -- --
105.1 0.48 2.9 -- 0.0604 -- -- -- 0.0452 1.69 -- -- -- --
100.11 0.466 2.89 -- -- 0.78 -- -- 0.0688 -- 1.1 8 -- --
105.33 0.479 2.9 -- -- -- -- -- 0.0463 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.22 wind 1 10 < th dose dependent rect. 7 17
2 94.26 wind 1 30 < th dose independent rect. 17 1
13 94.26 wind 1 30 < th dose dependent rect. 17 1
24 94.32 wind 1 10 < th dose dependent rect. 9 15
27 94.51 wind 1 10 < th dose dependent rect. 5 19
34 94.91 humidity 70 90 < th dose independent rect. 17 1
35 95.05 humidity 70 30 < th dose independent rect. 17 3
51 95.24 humidity 70 90 < th dose dependent rect. 17 1
92 95.47 humidity 60 270 < th dose independent rect. 9 1
136 95.93 humidity 70 270 < th dose dependent rect. 9 1
138 95.95 wind 1 10 < th dose independent rect. 5 20
139 95.97 wind 1 10 < th dose independent rect. 7 18
140 96.00 wind 1 10 < th dose independent rect. 9 16
158 96.05 wind 1 10 < th dose dependent sin 20 NA
180 96.32 wind 1 10 < th dose independent rect. 12 13
198 96.45 wind 1 10 < th dose dependent rect. 13 11
224 96.54 wind 1 10 < th dose independent rect. 23 1
228 96.54 wind 1 10 < th dose dependent rect. 23 1
233 96.61 wind 1 10 < th dose independent rect. 13 20
239 96.65 wind 1 10 < th dose independent rect. 17 8
241 96.66 wind 1 10 < th dose independent rect. 13 17
281 96.79 wind 1 10 < th dose dependent rect. 17 8
297 96.85 humidity 60 30 < th dose dependent sin 9 NA
298 96.86 wind 1 10 > th dose independent rect. 15 23
308 96.90 humidity 60 4320 > th dose independent rect. 8 1
310 96.93 wind 1 10 > th dose independent sin 16 NA
354 97.09 humidity 60 1440 > th dose independent rect. 22 12
358 97.11 humidity 60 1440 > th dose independent rect. 3 7
359 97.11 humidity 60 1440 > th dose independent rect. 20 14
363 97.12 humidity 60 1440 > th dose independent rect. 24 10
368 97.14 humidity 60 30 < th dose independent sin 9 NA
391 97.16 wind 1 10 < th dose dependent rect. 13 19
402 97.19 wind 1 10 < th dose dependent rect. 13 17
431 97.28 wind 1 10 < th dose independent rect. 23 19
440 97.31 wind 1 10 < th dose independent sin 15 NA
449 97.34 wind 1 10 > th dose independent rect. 23 23
463 97.36 humidity 60 30 > th dose independent sin 10 NA
471 97.39 wind 1 10 < th dose independent sin 21 NA
504 97.49 wind 1 10 < th dose independent rect. 23 10
522 97.55 wind 1 10 < th dose independent rect. 23 7
529 97.56 wind 1 10 < th dose dependent rect. 2 23
542 97.60 wind 1 10 < th dose independent rect. 17 15
567 97.65 wind 1 10 < th dose independent rect. 17 13
588 97.67 wind 1 10 < th dose dependent rect. 22 10
595 97.69 wind 1 90 < th dose independent rect. 12 12
598 97.69 wind 1 10 > th dose independent rect. 18 23
646 97.77 humidity 70 4320 < th dose independent rect. 20 11
653 97.79 wind 1 10 < th dose independent rect. 23 16
683 97.83 wind 1 10 > th dose independent no NA NA
690 97.83 wind 1 10 > th dose independent rect. 1 23
691 97.83 humidity 70 4320 < th dose dependent rect. 20 11
693 97.84 wind 1 90 < th dose independent rect. 22 2
696 97.84 radiation 40 10 > th dose dependent sin 11 NA
698 97.84 wind 1 10 < th dose dependent rect. 17 15
706 97.85 wind 1 10 > th dose independent rect. 3 23
711 97.86 wind 1 10 < th dose independent rect. 17 22
712 97.86 wind 1 10 < th dose independent rect. 7 23
716 97.86 wind 1 10 < th dose dependent rect. 23 19
738 97.87 wind 1 10 < th dose dependent rect. 17 13
745 97.88 wind 1 10 < th dose independent no NA NA
806 97.93 wind 1 10 < th dose dependent rect. 23 16
808 97.94 wind 1 10 < th dose independent rect. 14 4
840 97.98 humidity 70 270 < th dose dependent sin 8 NA
847 97.99 wind 1 10 > th dose independent rect. 5 23
854 97.99 wind 1 10 < th dose dependent rect. 7 11
872 98.03 wind 1 10 > th dose independent rect. 18 20
905 98.06 wind 1 10 < th dose dependent rect. 7 8
914 98.08 wind 1 10 < th dose dependent rect. 9 9
926 98.08 wind 1 10 < th dose dependent rect. 7 23
938 98.09 wind 1 10 < th dose dependent rect. 17 22
955 98.10 wind 1 10 > th dose independent rect. 18 13
958 98.10 wind 1 10 < th dose dependent no NA NA
975 98.11 wind 1 10 > th dose independent rect. 9 23
983 98.12 wind 1 10 < th dose independent rect. 7 11