Os01g0666200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : High mobility group box domain containing protein.
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Os01g0666200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : High mobility group box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.67 | 0.318 | 8.91 | 0.56 | 0.329 | 1.19 | -0.187 | 0.101 | 0.443 | 20.7 | 19.5 | 3472 | -- | -- |
| 45.69 | 0.315 | 8.91 | 0.542 | 0.33 | 1.18 | -0.198 | -- | 0.437 | 20.6 | 19.5 | 3469 | -- | -- |
| 45.78 | 0.315 | 8.91 | 0.565 | 0.328 | 1.19 | -- | 0.0866 | 0.443 | 20.8 | 19.5 | 3469 | -- | -- |
| 45.79 | 0.315 | 8.91 | 0.55 | 0.33 | 1.17 | -- | -- | 0.439 | 20.7 | 19.5 | 3471 | -- | -- |
| 51.76 | 0.335 | 8.9 | 0.552 | -- | 1.21 | -- | 0.121 | 0.434 | -- | 19.62 | 3594 | -- | -- |
| 67.41 | 0.385 | 8.85 | 1.19 | 0.354 | -- | -0.118 | -- | 0.714 | 20.9 | -- | -- | -- | -- |
| 67.46 | 0.385 | 8.85 | 1.19 | 0.354 | -- | -- | -- | 0.714 | 21 | -- | -- | -- | -- |
| 51.77 | 0.335 | 8.91 | 0.537 | -- | 1.19 | -- | -- | 0.426 | -- | 19.7 | 3591 | -- | -- |
| 48.12 | 0.323 | 8.94 | -- | 0.344 | 1.47 | -- | -- | 0.314 | 20.5 | 19.4 | 7991 | -- | -- |
| 74.65 | 0.404 | 8.84 | 1.19 | -- | -- | -- | -- | 0.711 | -- | -- | -- | -- | -- |
| 104.94 | 0.479 | 8.88 | -- | 0.353 | -- | -- | -- | 0.581 | 21.2 | -- | -- | -- | -- |
| 54.3 | 0.343 | 8.91 | -- | -- | 1.33 | -- | -- | 0.339 | -- | 18.6 | 22293 | -- | -- |
| 112.19 | 0.494 | 8.87 | -- | -- | -- | -- | -- | 0.579 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 3 | 45.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 6 | 45.36 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 14 | 45.40 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 43 | 45.56 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 49 | 45.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 61 | 45.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 74 | 45.70 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 82 | 45.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 85 | 45.72 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 87 | 45.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 89 | 45.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 96 | 45.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 106 | 45.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 120 | 45.91 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 124 | 45.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 145 | 46.00 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 161 | 46.03 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 195 | 46.09 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 267 | 46.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 286 | 46.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 306 | 46.35 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 310 | 46.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 20 |
| 316 | 46.36 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 15 |
| 353 | 46.39 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 360 | 46.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 419 | 46.43 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 433 | 46.44 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 487 | 46.51 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 509 | 46.55 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 566 | 46.63 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 608 | 46.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 635 | 46.72 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 670 | 46.76 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 701 | 46.80 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 737 | 46.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 743 | 46.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 775 | 46.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 805 | 46.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 868 | 46.90 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 873 | 46.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 874 | 46.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 881 | 46.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 20 |
| 906 | 46.92 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 22 |