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Os01g0665500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY3 (WRKY14) (WRKY transcription factor 16) (WRKY16).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.63 (0.0212) R2 : 0.819
β1 : 3.07 (0.0805) R2dD : 0.647 R2D : 0.404
β2 : 1.23 (0.0524) R2dC : 0.222 R2C : 0.177
β3 : 1 (0.0675) R2dE : 0.0946 R2E : -0.0771
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.732 (0.0455) R2dN8 : 0.141 R2N8 : -0.0089
σ : 0.396
deviance : 72.14
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_____
C
peak time of C : 21.1
E
wheather : temperature
threshold : 28.4
memory length : 4595
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.11 0.388 9.66 2.87 1.23 0.913 1.03 0.91 0.683 21.2 28.3 4597 -- --
68.47 0.385 9.64 3.1 1.23 1.01 1.12 -- 0.725 21.2 28.4 4595 -- --
71.82 0.395 9.66 2.84 1.23 0.911 -- 0.886 0.685 21.2 28.3 4595 -- --
72.14 0.396 9.63 3.07 1.23 1 -- -- 0.732 21.1 28.4 4595 -- --
158.38 0.586 9.62 2.85 -- 0.889 -- 0.945 0.695 -- 28 4523 -- --
103.52 0.477 9.65 2.78 1.2 -- 0.947 -- 0.653 21.2 -- -- -- --
106.69 0.484 9.65 2.74 1.19 -- -- -- 0.652 21.2 -- -- -- --
158.57 0.586 9.6 3.08 -- 0.982 -- -- 0.723 -- 28 4523 -- --
299.53 0.806 9.74 -- 1.18 0.337 -- -- 0.292 21.4 30.2 5911 -- --
189.29 0.643 9.62 2.75 -- -- -- -- 0.646 -- -- -- -- --
305.07 0.817 9.72 -- 1.19 -- -- -- 0.347 21.3 -- -- -- --
377.84 0.908 9.68 -- -- 0.383 -- -- 0.359 -- 28.81 8835 -- --
388.35 0.92 9.69 -- -- -- -- -- 0.341 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.22 precipitation 0.1 43200 > th dose dependent rect. 13 5
4 65.29 precipitation 0.1 43200 > th dose independent rect. 17 2
9 65.41 precipitation 0.1 43200 < th dose independent rect. 17 2
10 65.41 precipitation 0.1 43200 < th dose dependent rect. 17 2
15 65.67 temperature 15.0 270 > th dose dependent rect. 7 15
39 66.61 temperature 25.0 270 > th dose dependent rect. 17 21
52 67.09 radiation 20.0 4320 > th dose dependent rect. 15 16
60 67.22 radiation 30.0 4320 > th dose independent rect. 15 17
62 67.26 radiation 20.0 4320 < th dose independent rect. 15 16
65 67.32 radiation 40.0 14400 > th dose dependent rect. 12 1
66 67.32 radiation 20.0 4320 > th dose dependent rect. 15 2
82 67.38 radiation 30.0 4320 < th dose independent rect. 15 1
90 67.53 temperature 10.0 270 > th dose dependent rect. 16 23
93 67.56 radiation 30.0 4320 < th dose independent rect. 15 5
94 67.57 radiation 30.0 4320 < th dose independent rect. 15 7
103 67.63 radiation 30.0 4320 > th dose independent rect. 15 2
197 68.24 precipitation 0.1 43200 > th dose dependent sin 20 NA
204 68.34 temperature 30.0 14400 < th dose independent rect. 15 19
209 68.40 temperature 30.0 14400 > th dose independent rect. 15 19
270 68.76 temperature 20.0 10 > th dose dependent rect. 8 16
272 68.78 temperature 30.0 14400 < th dose independent rect. 15 2
275 68.80 temperature 30.0 14400 > th dose independent rect. 15 2
282 68.84 temperature 25.0 4320 > th dose dependent rect. 7 5
287 68.86 temperature 25.0 4320 > th dose dependent rect. 7 3
304 68.94 radiation 10.0 14400 < th dose independent sin 14 NA
354 69.04 temperature 30.0 14400 > th dose independent rect. 8 2
377 69.07 temperature 15.0 270 > th dose dependent rect. 4 21
443 69.31 temperature 30.0 14400 < th dose independent rect. 3 7
465 69.37 temperature 30.0 14400 < th dose independent rect. 23 11
466 69.37 temperature 30.0 14400 < th dose independent rect. 19 15
479 69.40 temperature 30.0 14400 < th dose independent rect. 21 13
489 69.43 radiation 10.0 14400 > th dose independent rect. 17 1
517 69.44 temperature 30.0 14400 > th dose independent sin 11 NA
525 69.47 temperature 30.0 14400 < th dose independent rect. 15 7
530 69.48 temperature 30.0 14400 < th dose independent rect. 15 9
538 69.49 temperature 30.0 14400 < th dose independent rect. 15 14
567 69.54 temperature 30.0 14400 < th dose independent sin 11 NA
618 69.58 temperature 30.0 270 < th dose dependent rect. 22 21
630 69.62 radiation 40.0 4320 < th dose dependent rect. 15 16
639 69.67 wind 9.0 43200 > th dose dependent rect. 20 10
669 69.78 radiation 40.0 14400 < th dose independent rect. 12 1
688 69.85 wind 9.0 43200 < th dose independent rect. 20 5
697 69.88 temperature 25.0 4320 > th dose dependent sin 6 NA
698 69.88 temperature 20.0 10 > th dose dependent rect. 3 23
751 69.95 temperature 20.0 720 > th dose dependent rect. 1 14
789 70.02 temperature 25.0 14400 > th dose dependent rect. 18 1
791 70.03 wind 9.0 43200 < th dose independent rect. 20 9
829 70.12 temperature 30.0 4320 < th dose independent rect. 11 1
873 70.19 precipitation 0.1 43200 > th dose dependent rect. 17 15
901 70.24 temperature 25.0 14400 > th dose dependent rect. 17 4
906 70.25 wind 9.0 43200 > th dose independent rect. 20 10
914 70.27 temperature 20.0 720 > th dose dependent sin 4 NA
916 70.28 radiation 40.0 14400 > th dose independent rect. 12 1
952 70.33 radiation 40.0 4320 < th dose dependent rect. 15 5
953 70.33 radiation 40.0 4320 < th dose dependent rect. 15 7
966 70.35 radiation 40.0 4320 < th dose dependent rect. 15 9
989 70.41 precipitation 0.1 43200 < th dose independent rect. 20 1
993 70.41 precipitation 0.1 43200 < th dose dependent rect. 20 1
994 70.42 wind 9.0 43200 > th dose independent rect. 20 5
1000 70.43 temperature 30.0 4320 > th dose independent rect. 11 1