Os01g0665400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribokinase family protein.
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Os01g0665400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.49 | 0.347 | 10.9 | 0.266 | 1.87 | -1.44 | -0.416 | 0.274 | 0.25 | 21.1 | 20.73 | 750 | -- | -- |
| 54.54 | 0.344 | 10.9 | 0.28 | 1.87 | -1.53 | -0.452 | -- | 0.254 | 21.1 | 20.64 | 739 | -- | -- |
| 55.02 | 0.345 | 10.9 | 0.257 | 1.88 | -1.36 | -- | 0.571 | 0.245 | 21.1 | 20.82 | 775 | -- | -- |
| 55.26 | 0.346 | 10.9 | 0.292 | 1.87 | -1.55 | -- | -- | 0.253 | 21.1 | 20.6 | 748 | -- | -- |
| 211.47 | 0.677 | 10.9 | -0.303 | -- | -2.35 | -- | 2.08 | -0.0746 | -- | 32.34 | 672 | -- | -- |
| 74.12 | 0.404 | 10.8 | 0.621 | 1.97 | -- | -0.573 | -- | 0.405 | 21.2 | -- | -- | -- | -- |
| 75.28 | 0.406 | 10.8 | 0.642 | 1.97 | -- | -- | -- | 0.406 | 21.2 | -- | -- | -- | -- |
| 212.55 | 0.679 | 10.9 | 0.0111 | -- | -2.35 | -- | -- | -0.0442 | -- | 30.21 | 680 | -- | -- |
| 57.19 | 0.352 | 10.9 | -- | 1.86 | -1.72 | -- | -- | 0.208 | 21 | 20.6 | 803 | -- | -- |
| 300.85 | 0.81 | 10.8 | 0.648 | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
| 86.15 | 0.434 | 10.9 | -- | 1.97 | -- | -- | -- | 0.334 | 21.2 | -- | -- | -- | -- |
| 212.51 | 0.679 | 10.9 | -- | -- | -2.32 | -- | -- | -0.0503 | -- | 30.1 | 676 | -- | -- |
| 311.93 | 0.824 | 10.8 | -- | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.40 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 1 | 17 |
| 3 | 51.77 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 23 | 21 |
| 6 | 51.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 21 | 52.90 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 16 |
| 27 | 53.23 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 23 | 10 |
| 33 | 53.73 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 39 | 53.82 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 61 | 54.09 | temperature | 20 | 720 | < th | dose dependent | sin | 10 | NA |
| 68 | 54.18 | temperature | 20 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 93 | 54.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 189 | 54.76 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 192 | 54.79 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 193 | 54.79 | temperature | 20 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 216 | 54.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 272 | 55.23 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 17 |
| 303 | 55.40 | temperature | 20 | 720 | < th | dose independent | sin | 3 | NA |
| 339 | 55.54 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 356 | 55.67 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 360 | 55.68 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 410 | 55.86 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 11 | 9 |
| 489 | 56.21 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 8 |
| 505 | 56.29 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 555 | 56.49 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 570 | 56.55 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 5 |
| 581 | 56.59 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 11 | 22 |
| 862 | 57.17 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 963 | 57.35 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 986 | 57.39 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 8 |