Os01g0665200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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Os01g0665200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.77 | 0.338 | 11.6 | -0.932 | 0.536 | -0.885 | -1.34 | 0.485 | 0.304 | 0.886 | 25.59 | 544 | -- | -- |
| 52.13 | 0.336 | 11.6 | -1.07 | 0.534 | -0.844 | -1.32 | -- | 0.255 | 1.12 | 25.52 | 544 | -- | -- |
| 58.92 | 0.358 | 11.6 | -0.961 | 0.561 | -0.812 | -- | 0.246 | 0.264 | 1.62 | 25.57 | 562 | -- | -- |
| 58.7 | 0.357 | 11.6 | -1.01 | 0.711 | -0.829 | -- | -- | 0.241 | 2.04 | 25.5 | 717 | -- | -- |
| 70.53 | 0.391 | 11.6 | -0.929 | -- | -0.792 | -- | 0.464 | 0.313 | -- | 25.1 | 350 | -- | -- |
| 79.38 | 0.418 | 11.6 | -1.28 | 0.738 | -- | -0.806 | -- | -0.0728 | 3.82 | -- | -- | -- | -- |
| 80.94 | 0.421 | 11.6 | -1.27 | 0.745 | -- | -- | -- | -0.0685 | 4.22 | -- | -- | -- | -- |
| 71.21 | 0.393 | 11.6 | -1.02 | -- | -0.783 | -- | -- | 0.267 | -- | 25.4 | 369 | -- | -- |
| 83.02 | 0.424 | 11.5 | -- | 0.844 | -1.14 | -- | -- | 0.382 | 2.57 | 26.2 | 956 | -- | -- |
| 110.92 | 0.492 | 11.6 | -1.24 | -- | -- | -- | -- | -0.0487 | -- | -- | -- | -- | -- |
| 123.15 | 0.519 | 11.6 | -- | 0.72 | -- | -- | -- | 0.0724 | 4.25 | -- | -- | -- | -- |
| 98.25 | 0.462 | 11.5 | -- | -- | -0.888 | -- | -- | 0.443 | -- | 25.12 | 360 | -- | -- |
| 151.19 | 0.574 | 11.6 | -- | -- | -- | -- | -- | 0.0884 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.46 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 19 |
| 4 | 52.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 27 | 53.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 40 | 53.94 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 53 | 54.14 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 23 |
| 63 | 54.31 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 65 | 54.35 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 85 | 54.56 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 95 | 54.70 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 23 |
| 113 | 54.89 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 23 |
| 125 | 55.01 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 23 |
| 127 | 55.03 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 23 |
| 129 | 55.05 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 23 |
| 133 | 55.10 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 134 | 55.10 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 23 |
| 142 | 55.14 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 165 | 55.25 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 192 | 55.44 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 23 |
| 219 | 55.68 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 339 | 56.48 | temperature | 20 | 10 | > th | dose dependent | sin | 16 | NA |
| 342 | 56.50 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 343 | 56.51 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 408 | 56.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 414 | 56.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 467 | 57.18 | radiation | 1 | 270 | > th | dose independent | rect. | 8 | 22 |
| 537 | 57.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 587 | 57.74 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 7 |
| 595 | 57.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 597 | 57.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 623 | 57.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 657 | 57.96 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 660 | 57.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 680 | 58.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 707 | 58.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 709 | 58.07 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 717 | 58.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 730 | 58.10 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 739 | 58.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 745 | 58.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 750 | 58.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 753 | 58.15 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 794 | 58.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 837 | 58.32 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 855 | 58.37 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 879 | 58.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 934 | 58.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 937 | 58.49 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |