Os01g0663500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcriptional coactivator/pterin dehydratase family protein.
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Os01g0663500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcriptional coactivator/pterin dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.7 | 0.328 | 9.74 | -0.576 | 0.825 | -0.589 | 1.29 | 1.4 | -0.0109 | 20.4 | 27.1 | 6987 | -- | -- |
| 49.97 | 0.329 | 9.78 | -0.836 | 0.805 | -0.559 | 1.3 | -- | -0.000576 | 20.3 | 25.4 | 14611 | -- | -- |
| 53.94 | 0.342 | 9.74 | -0.586 | 0.818 | -0.594 | -- | 1.47 | -0.00318 | 20.6 | 27.1 | 6987 | -- | -- |
| 54.57 | 0.344 | 9.76 | -0.841 | 0.794 | -0.671 | -- | -- | 0.0264 | 20.5 | 23.6 | 18922 | -- | -- |
| 91.29 | 0.445 | 9.72 | -0.524 | -- | -0.597 | -- | 1.6 | 0.00829 | -- | 27.36 | 7132 | -- | -- |
| 59.82 | 0.363 | 9.84 | -1.27 | 0.815 | -- | 1.32 | -- | -0.312 | 20.3 | -- | -- | -- | -- |
| 65.14 | 0.378 | 9.84 | -1.31 | 0.811 | -- | -- | -- | -0.312 | 20.4 | -- | -- | -- | -- |
| 91.06 | 0.444 | 9.74 | -0.729 | -- | -0.731 | -- | -- | 0.000998 | -- | 22.4 | 17326 | -- | -- |
| 56.26 | 0.349 | 9.7 | -- | 0.809 | -1.11 | -- | -- | 0.189 | 20.4 | 19.8 | 33732 | -- | -- |
| 101.83 | 0.472 | 9.82 | -1.32 | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
| 110.51 | 0.492 | 9.8 | -- | 0.817 | -- | -- | -- | -0.166 | 20.3 | -- | -- | -- | -- |
| 93.31 | 0.45 | 9.71 | -- | -- | -1.16 | -- | -- | 0.13 | -- | 19.44 | 34847 | -- | -- |
| 147.52 | 0.567 | 9.78 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.96 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 14 |
| 9 | 45.24 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 12 | 45.71 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 16 | 46.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 13 |
| 17 | 46.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 19 | 46.19 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 38 | 47.10 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 12 |
| 41 | 47.33 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 5 |
| 52 | 47.80 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 53 | 47.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 55 | 47.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 60 | 47.89 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 74 | 48.06 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 76 | 48.09 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 83 | 48.14 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 86 | 48.14 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 87 | 48.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 13 |
| 88 | 48.15 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 3 |
| 93 | 48.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 99 | 48.19 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 114 | 48.22 | radiation | 10 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 120 | 48.23 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 137 | 48.26 | temperature | 20 | 90 | > th | dose dependent | sin | 6 | NA |
| 150 | 48.32 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 154 | 48.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 180 | 48.40 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 185 | 48.41 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 186 | 48.42 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 193 | 48.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 210 | 48.50 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 216 | 48.52 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 234 | 48.54 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 244 | 48.55 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 250 | 48.56 | temperature | 20 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 266 | 48.58 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 13 |
| 272 | 48.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 280 | 48.59 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 281 | 48.60 | temperature | 25 | 14400 | > th | dose independent | sin | 1 | NA |
| 299 | 48.60 | wind | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 304 | 48.60 | temperature | 20 | 14400 | > th | dose dependent | rect. | 24 | 7 |
| 321 | 48.62 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 334 | 48.63 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 342 | 48.64 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 362 | 48.65 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 382 | 48.66 | temperature | 25 | 14400 | < th | dose independent | sin | 1 | NA |
| 386 | 48.66 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 496 | 48.71 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 517 | 48.71 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 567 | 48.74 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 594 | 48.75 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 612 | 48.75 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 20 |
| 652 | 48.77 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 753 | 48.79 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 755 | 48.79 | temperature | 20 | 14400 | > th | dose dependent | sin | 9 | NA |
| 945 | 48.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 990 | 48.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 1 |