Os01g0663400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-).
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Os01g0663400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.36 | 0.432 | 9.5 | -1.39 | 1.17 | 1.6 | 0.499 | -2.37 | -0.597 | 9.97 | 25.49 | 1344 | -- | -- |
| 86.02 | 0.432 | 9.42 | -0.745 | 1.17 | 1.33 | 0.531 | -- | -0.409 | 9.98 | 25.9 | 1329 | -- | -- |
| 85.28 | 0.43 | 9.5 | -1.39 | 1.16 | 1.59 | -- | -2.41 | -0.583 | 9.96 | 25.67 | 1352 | -- | -- |
| 87.23 | 0.435 | 9.42 | -0.727 | 1.16 | 1.31 | -- | -- | -0.399 | 9.97 | 26 | 1350 | -- | -- |
| 161.47 | 0.592 | 9.52 | -1.37 | -- | 1.49 | -- | -2.43 | -0.536 | -- | 26.06 | 1478 | -- | -- |
| 161.94 | 0.597 | 9.4 | -0.3 | 1.08 | -- | 0.488 | -- | -0.314 | 9.4 | -- | -- | -- | -- |
| 162.8 | 0.598 | 9.4 | -0.282 | 1.08 | -- | -- | -- | -0.313 | 9.43 | -- | -- | -- | -- |
| 162.44 | 0.594 | 9.46 | -0.781 | -- | 1.34 | -- | -- | -0.38 | -- | 26.39 | 5823 | -- | -- |
| 99.95 | 0.466 | 9.38 | -- | 1.15 | 1.17 | -- | -- | -0.258 | 9.95 | 26.7 | 1328 | -- | -- |
| 231.42 | 0.711 | 9.43 | -0.288 | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
| 164.9 | 0.601 | 9.39 | -- | 1.08 | -- | -- | -- | -0.281 | 9.45 | -- | -- | -- | -- |
| 175.07 | 0.616 | 9.41 | -- | -- | 1.07 | -- | -- | -0.253 | -- | 27.8 | 5843 | -- | -- |
| 233.62 | 0.713 | 9.42 | -- | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 2 | 83.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 32 | 84.25 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 42 | 84.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 75 | 84.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 77 | 84.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 103 | 85.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 130 | 85.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 222 | 85.65 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 241 | 85.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 264 | 86.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 367 | 90.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 373 | 91.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 378 | 91.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 383 | 91.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 385 | 91.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 389 | 91.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 390 | 91.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 391 | 91.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 396 | 91.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 397 | 91.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 402 | 91.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 403 | 91.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 404 | 91.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 419 | 91.45 | temperature | 30 | 1440 | < th | dose independent | sin | 19 | NA |
| 429 | 91.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 430 | 91.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 434 | 91.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 443 | 91.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 447 | 91.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 467 | 91.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 484 | 91.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 488 | 91.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 496 | 91.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 497 | 91.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 503 | 91.72 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 508 | 91.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 516 | 91.75 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 517 | 91.76 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 546 | 91.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 562 | 91.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 563 | 91.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 564 | 91.87 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 565 | 91.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 568 | 91.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 569 | 91.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 584 | 91.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 649 | 91.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 693 | 92.21 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 728 | 92.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 730 | 92.33 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 745 | 92.36 | temperature | 30 | 1440 | > th | dose independent | sin | 18 | NA |
| 825 | 92.81 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 920 | 92.85 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 942 | 92.90 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |